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BioLiP
>protein
DPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQ

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ymb:D 231 72 0.9863 0.3117 1.0000 4.59e-47 4a5x:A, 4a5x:B, 2ymb:C
2 5fvl:A 83 68 0.3014 0.2651 0.3235 1.18e-09 5fvk:A, 5fvk:B, 5fvl:B, 4niq:A, 4niq:B
3 4u7y:A 83 71 0.3151 0.2771 0.3239 2.40e-06 2jqk:A
4 2k3w:A 73 66 0.3014 0.3014 0.3333 8.46e-06 2jq9:A
5 8uc6:B 148 69 0.2877 0.1419 0.3043 0.028 8uc6:C
6 8uc6:B 148 65 0.2329 0.1149 0.2615 2.4 8uc6:C
7 8d0k:D 419 44 0.2192 0.0382 0.3636 0.23 4bpu:A, 4bpu:C, 4bpw:A, 4bpw:C, 4bpx:A, 4bpx:C, 9c8v:A, 8d9d:A, 5exr:A, 5exr:E, 4lik:A, 4lil:A, 4mhq:A, 7opl:C, 8qj7:C, 6r4s:A, 6r4s:E, 6r4t:A, 6r4t:D, 6r4u:A, 6r4u:E, 6r5d:A, 6r5d:E, 6r5e:A, 6r5e:E, 6rb4:A, 4rr2:A, 4rr2:C, 7u5c:A
8 6c5c:A 385 37 0.2192 0.0416 0.4324 0.99 6c5c:B
9 5w8q:A 379 37 0.1781 0.0343 0.3514 2.0 5w8q:B, 5wc4:A, 5wc4:B
10 7dn3:A 1293 40 0.1644 0.0093 0.3000 6.4 7du2:A
11 7d58:A 1387 40 0.1644 0.0087 0.3000 6.4 7a6h:A, 7ae1:A, 7ae3:A, 7aea:A, 7fji:A, 7fjj:A, 8ity:A, 8iue:A, 8iuh:A
12 5wp9:A 590 49 0.2329 0.0288 0.3469 8.9 8skn:A, 8skn:B, 3w6n:A, 3w6n:B, 3w6o:A, 3w6o:B, 3w6p:A, 3w6p:B, 5wp9:C, 5wp9:E, 5wp9:G, 5wp9:I, 5wp9:K, 5wp9:M, 5wp9:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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