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BioLiP
>protein
DPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYV

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fld:NP 108 62 0.9254 0.5741 1.0000 8.99e-43 8fl2:NP, 8fl3:NP, 8fl4:NP, 8fl6:NP, 8fl7:NP, 8fl9:NP, 8fla:NP, 8flb:NP, 8flc:NP, 8fle:NP, 8flf:NP, 8idt:9, 8idy:9, 8ie3:9, 8ine:9, 8inf:9, 8ink:9, 8ipd:9, 8ipx:9, 8ipy:9, 8ir3:9, 6lss:9, 6lu8:9, 1zr9:A
2 8hfr:ox 143 60 0.4030 0.1888 0.4500 9.04e-13 6ft6:I, 3jct:I, 6m62:I, 6n8j:I, 6n8k:I, 6n8l:I, 7ug6:I, 7uoo:I, 7uqb:I, 7uqz:I, 7v08:I, 6ylg:I, 6ylh:I, 6yly:I, 7z34:I
3 8pv1:Cb 101 54 0.4030 0.2673 0.5000 5.30e-12 8pv2:Cb, 8pv3:Cb, 8pv4:Cb, 8pv5:Cb, 8pv6:Cb, 8pv7:Cb, 8pv8:Cb, 8pvk:Cb, 8pvl:Cb
4 2dmd:A 96 48 0.2239 0.1562 0.3125 0.65
5 2drp:D 65 56 0.2239 0.2308 0.2679 0.66 2drp:A
6 2eom:A 46 21 0.1194 0.1739 0.3810 1.0
7 2ep3:A 46 19 0.1343 0.1957 0.4737 1.1
8 2epx:A 47 21 0.1194 0.1702 0.3810 1.3
9 1klr:A 30 28 0.1642 0.3667 0.3929 1.8 1kls:A, 1xrz:A, 5znf:A, 7znf:A
10 2kmk:A 82 21 0.1493 0.1220 0.4762 2.1
11 1ahp:A 796 24 0.1940 0.0163 0.5417 2.6 1ahp:B, 2asv:A, 2asv:B, 2av6:A, 2av6:B, 2aw3:A, 2aw3:B, 2azd:A, 2azd:B, 1e4o:A, 1e4o:B, 2ecp:A, 2ecp:B, 1l5v:A, 1l5v:B, 1l5w:A, 1l5w:B, 1l6i:A, 1l6i:B, 1qm5:A, 1qm5:B, 8rvk:A
12 2emm:A 46 21 0.1343 0.1957 0.4286 3.7
13 5wjq:D 281 50 0.2388 0.0569 0.3200 3.9 5v3j:E, 5v3j:F, 5v3m:C
14 5vmt:B 334 43 0.2090 0.0419 0.3256 4.3 5vmt:A, 5vmt:C, 5vmt:D, 5vmt:F, 5vmt:G, 5vmt:H
15 6lsr:3 255 40 0.2239 0.0588 0.3750 5.0 6lqm:3, 6lu8:3
16 6ml4:A 143 26 0.1642 0.0769 0.4231 5.1 6ml2:A, 6ml3:A, 6ml5:A, 6ml6:A, 6ml7:A
17 6g90:T 462 25 0.1493 0.0216 0.4000 5.8 7dco:u, 4dgw:A, 5nrl:T, 5zwm:u
18 8fbc:A 393 44 0.2239 0.0382 0.3409 6.3 8fbc:B
19 8f8y:B 433 54 0.2090 0.0323 0.2593 6.5 8f8y:A, 8f8z:A, 8f8z:B, 3kqi:A, 7m10:A, 3pu3:A, 3pu3:B, 3pu8:B, 3pu8:A, 3pua:A, 3pus:A, 3pus:B
20 1n63:B 805 17 0.1493 0.0124 0.5882 6.6 1n5w:B, 1n5w:E, 1n60:B, 1n60:E, 1n61:B, 1n61:E, 1n62:B, 1n62:E, 1n63:E, 1zxi:B, 1zxi:E
21 2mdg:A 55 24 0.1194 0.1455 0.3333 6.8
22 6n69:B 199 20 0.1493 0.0503 0.5000 7.1 6n69:A, 1pd2:1, 1pd2:2, 5y9z:A, 5y9z:B
23 7tm7:A 802 24 0.1940 0.0162 0.5417 7.2 7tm7:B
24 3d45:B 373 27 0.1642 0.0295 0.4074 7.4 3ctr:A
25 4ec0:B 200 23 0.1493 0.0500 0.4348 8.0 5ais:A, 5ais:B, 5ais:C, 5ais:D, 5aiv:A, 5aiv:B, 5aiv:C, 5aiv:D, 5aix:B, 5aix:C, 2cvd:A, 2cvd:B, 2cvd:C, 2cvd:D, 4ec0:A, 4edy:A, 4edy:B, 4edz:A, 4edz:B, 4edz:C, 4edz:D, 3ee2:A, 4ee0:A, 4ee0:B, 1iyh:A, 1iyh:B, 1iyh:C, 1iyh:D, 1iyi:A, 1iyi:B, 1iyi:C, 1iyi:D, 7jr6:A, 7jr6:B, 7jr8:A, 7jr8:B, 3kxo:A, 3kxo:B, 6n4e:A, 1v40:A, 1v40:B, 1v40:C, 1v40:D, 2vcq:A, 2vcq:B, 2vcq:C, 2vcq:D, 2vcw:A, 2vcw:B, 2vcw:D, 2vcx:A, 2vcx:B, 2vcx:C, 2vcx:D, 2vcz:A, 2vcz:B, 2vcz:D, 2vd0:A, 2vd0:B, 2vd0:D, 2vd1:A, 2vd1:B, 2vd1:C, 2vd1:D, 3vi5:A, 3vi5:B, 3vi5:C, 3vi5:D, 3vi7:A, 3vi7:B, 3vi7:C, 3vi7:D, 6w58:A, 6w58:B, 6w8h:A, 6w8h:C, 5ywe:A, 5ywe:B, 5ywe:C, 5ywe:D, 5ywx:A, 5ywx:B, 5ywx:C, 5ywx:D, 5yx1:A, 5yx1:B, 5yx1:C, 5yx1:D, 6ztc:A, 6ztc:B
26 2vcz:C 177 20 0.1493 0.0565 0.5000 8.7
27 2adr:A 60 25 0.1493 0.1667 0.4000 8.8 1paa:A
28 7mc1:A 31 22 0.1194 0.2581 0.3636 9.2
29 6qdj:A 758 30 0.1493 0.0132 0.3333 9.8
30 2em6:A 46 22 0.1194 0.1739 0.3636 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417