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BioLiP
>protein
DPLSDAEIQKYREEINRLDREILDAVKRRTKISQTIGKTRMSSGGTRLVHTREVAIINQFREEIGEEGPALAGILLRMGR
GKLG

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5hud:E 84 84 1.0000 1.0000 1.0000 5.60e-56 5hud:F, 5hud:G, 5hud:H
2 5ckx:D 79 66 0.4524 0.4810 0.5758 2.94e-19 5ckx:C, 2w1a:C, 2w1a:D
3 8vxa:A 1139 68 0.2619 0.0193 0.3235 0.62 8vxc:A
4 8vxy:B 1161 68 0.2619 0.0189 0.3235 0.63
5 1keq:A 238 33 0.1310 0.0462 0.3333 1.8 1dmx:A, 1dmx:B, 1dmy:A, 1dmy:B, 1keq:B, 1urt:A
6 7bkb:G 568 44 0.1786 0.0264 0.3409 4.1 7bkb:g, 7bkc:G, 7bkc:g
7 6gsn:p 658 67 0.2262 0.0289 0.2836 4.7 8cah:p, 8cas:p, 6fyx:p, 6fyy:p, 6gsm:p, 6zce:p, 6zu9:p
8 3s5x:A 132 42 0.1548 0.0985 0.3095 5.2
9 2ism:B 333 61 0.2024 0.0511 0.2787 5.2 2ism:A
10 3bm4:A 197 43 0.1429 0.0609 0.2791 6.9 3ac9:A, 3ac9:B, 3aca:A, 3aca:B, 3bm4:B, 2dsc:A, 2dsc:B, 2dsd:A, 2dsd:B, 6gru:A, 6gru:B, 6gru:C, 6gru:D, 3l85:A, 3l85:B, 5nqr:A, 5nqr:B, 5nwh:A, 5nwh:B, 8ptt:A, 8ptt:B, 8ptt:C, 8ptt:D, 5qj4:A, 5qj4:B, 5qj4:C, 5qj4:D, 5qj5:A, 5qj5:B, 5qj5:C, 5qj5:D, 5qj6:A, 5qj6:B, 5qj6:C, 5qj6:D, 5qj7:A, 5qj7:B, 5qj7:C, 5qj7:D, 5qj8:A, 5qj8:B, 5qj8:C, 5qj9:A, 5qj9:B, 5qj9:C, 5qj9:D, 5qja:A, 5qja:B, 5qja:C, 5qja:D, 5qjb:A, 5qjb:B, 5qjb:C, 5qjb:D, 5qjc:A, 5qjc:B, 5qjc:C, 5qjc:D, 5qjd:A, 5qjd:B, 5qjd:C, 5qjd:D, 5qje:A, 5qje:B, 5qje:C, 5qje:D, 5qjf:A, 5qjf:B, 5qjf:C, 5qjf:D, 5qjg:A, 5qjg:B, 5qjg:C, 5qjg:D, 5qjh:A, 5qjh:B, 5qjh:C, 5qji:A, 5qji:B, 5qji:C, 5qji:D, 5qjj:A, 5qjj:B, 5qjj:C, 5qjj:D, 5qjk:A, 5qjk:B, 5qjk:C, 5qjk:D, 5qjl:A, 5qjl:B, 5qjl:C, 5qjl:D, 5qjm:A, 5qjm:B, 5qjm:C, 5qjm:D, 5qjn:A, 5qjn:B, 5qjn:C, 5qjo:A, 5qjo:B, 5qjo:C, 5qjo:D, 5qjp:A, 5qjp:B, 5qjp:C, 5qjp:D, 5qjq:A, 5qjq:B, 5qjq:C, 5qjq:D, 5qjr:A, 5qjr:B, 5qjr:C, 5qjr:D, 5qjs:A, 5qjs:B, 5qjs:C, 5qjs:D, 5qjt:A, 5qjt:B, 5qjt:C, 5qjt:D, 5qju:A, 5qju:B, 5qju:C, 5qju:D, 5qjv:A, 5qjv:B, 5qjv:C, 5qjv:D, 5qjw:A, 5qjw:B, 5qjw:C, 5qjw:D, 5qjx:A, 5qjx:B, 5qjx:C, 5qjx:D, 5qjy:A, 5qjy:B, 5qjy:C, 5qjy:D, 5qjz:A, 5qjz:B, 5qjz:C, 5qjz:D, 5qk0:A, 5qk0:B, 5qk0:C, 5qk0:D, 5qk1:A, 5qk1:B, 5qk1:C, 5qk1:D, 5qk2:A, 5qk2:B, 5qk2:C, 5qk2:D, 5qk3:A, 5qk3:B, 5qk3:C, 5qk3:D, 5qk4:A, 5qk4:B, 5qk4:C, 5qk4:D, 5qk5:A, 5qk5:B, 5qk5:C, 5qk5:D, 5qk6:A, 5qk6:B, 5qk6:C, 5qk6:D, 5qk7:A, 5qk7:B, 5qk7:C, 5qk7:D, 5qk8:A, 5qk8:B, 5qk8:C, 5qk8:D, 5qk9:A, 5qk9:B, 5qk9:C, 5qk9:D, 5qka:A, 5qka:B, 5qka:C, 5qka:D, 5qkb:A, 5qkb:B, 5qkb:C, 5qkb:D, 5qtl:A, 5qtl:B, 5qtl:C, 5qtl:D, 5qtm:A, 5qtm:B, 5qtm:C, 5qtm:D, 5qtn:A, 5qtn:B, 5qtn:C, 5qtn:D, 5qto:A, 5qto:B, 5qto:C, 5qto:D, 5qtp:A, 5qtp:B, 5qtp:C, 5qtp:D, 5qtq:A, 5qtq:B, 5qtq:C, 5qtq:D, 5qtr:A, 5qtr:B, 5qtr:C, 5qtr:D, 5qts:A, 5qts:B, 5qts:C, 5qts:D, 8rdz:A, 8rdz:C, 8rdz:B, 8rdz:D, 8riy:AAA, 8riy:BBB
11 4gk9:A 279 41 0.1548 0.0466 0.3171 6.9
12 3sks:A 544 54 0.2024 0.0312 0.3148 7.0
13 7xjp:B 509 48 0.1429 0.0236 0.2500 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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