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BioLiP
>protein
DPAKAAFNSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTSKAS

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8b3p:LLL 46 46 0.9565 0.9565 0.9565 1.22e-25 8b3o:KKK, 8b3o:LLL, 8b3o:MMM, 8b3o:NNN, 8b3o:OOO, 8b3p:NNN, 8b3p:OOO, 8ixl:A, 8ixl:N, 8ixl:V, 8ixl:DA, 8ixl:Z, 8jww:A, 8jww:N, 8jww:V, 8jww:DA, 8jww:Z
2 7e9y:A 563 25 0.1957 0.0160 0.3600 3.8
3 2yhe:A 639 20 0.2174 0.0156 0.5000 6.7 4av7:A, 4av7:B, 4av7:C, 4av7:D, 4av7:E, 4av7:F, 4axh:A, 4axh:B, 2yhe:B, 2yhe:C, 2yhe:D, 2yhe:E, 2yhe:F
4 2zzv:A 330 25 0.1957 0.0273 0.3600 7.2 2zzv:B, 2zzw:A, 2zzw:B, 2zzx:C
5 4aj9:C 682 37 0.3261 0.0220 0.4054 7.4 4aj9:A, 4aj9:B, 4aj9:D, 4bim:A, 4bim:B, 4bim:C, 4bim:D, 3ej6:A, 3ej6:B, 3ej6:C, 3ej6:D, 6nsw:A, 6nsw:B, 6nsw:C, 6nsw:D, 6nsy:A, 6nsy:B, 6nsy:C, 6nsy:D, 6nsz:A, 6nsz:B, 6nsz:C, 6nsz:D, 6nt0:A, 6nt0:B, 6nt0:C, 6nt0:D, 6nt1:A, 6nt1:B, 6nt1:C, 6nt1:D, 3zj4:A, 3zj4:B, 3zj4:C, 3zj4:D, 3zj5:A, 3zj5:B, 3zj5:C, 3zj5:D
6 7vu2:A 435 19 0.2174 0.0230 0.5263 7.9 7vu3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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