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BioLiP
>protein
DNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYWSIGG

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2heo:A 59 59 1.0000 1.0000 1.0000 2.92e-38 2heo:D, 1j75:A
2 3f21:A 67 59 0.3390 0.2985 0.3390 6.96e-04 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
3 4kmf:A 62 57 0.2881 0.2742 0.2982 0.003
4 2acj:A 53 59 0.3051 0.3396 0.3051 0.037 5zuo:A, 5zup:A
5 5zu1:D 47 60 0.3051 0.3830 0.3000 0.042
6 4b0n:A 379 34 0.2034 0.0317 0.3529 0.36 4b0n:B
7 1sfu:A 70 51 0.3051 0.2571 0.3529 0.40 1sfu:B
8 6hl7:C 322 35 0.2203 0.0404 0.3714 0.49
9 7zea:B 346 35 0.2203 0.0376 0.3714 0.54 6fba:A, 6fba:B, 6fba:C, 6hl7:A, 7zcz:A, 7zcz:C, 7zcz:B, 7zea:A, 7zgs:A, 7zgs:C, 7zgs:B, 7zhi:A, 7zhi:C, 7zhi:B, 7zid:B, 7zp2:A, 7zp2:B, 7zst:B, 7zst:C
10 7x5b:A 312 40 0.2373 0.0449 0.3500 1.0 6blb:A, 7x7p:M, 7x7p:P, 7x7q:M, 7x7q:P
11 4evi:A 360 59 0.2712 0.0444 0.2712 2.3 4e70:A, 4e70:B, 4evi:B
12 5yvg:B 764 41 0.2373 0.0183 0.3415 3.4
13 4chu:B 127 40 0.2034 0.0945 0.3000 4.3
14 4hf1:A 129 40 0.2034 0.0930 0.3000 4.5 4chu:A, 4hf1:B, 4hf2:A, 4hf2:B
15 6cig:A 349 35 0.1695 0.0287 0.2857 4.7 1fp2:A
16 7ohg:A 351 52 0.2881 0.0484 0.3269 7.7 6s2t:A, 6s2u:A, 6s2v:A
17 2qyo:A 353 36 0.1525 0.0255 0.2500 8.0 2qyo:B
18 5xip:B 475 53 0.2542 0.0316 0.2830 9.2 5xip:A, 5xip:C, 5xip:D
19 6m77:A 907 13 0.1356 0.0088 0.6154 9.8 7f7q:A, 7f7r:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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