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BioLiP
>protein
DMEIAYPITCGESKAILLWKKFVCPGINVKCVKFNDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQIDFYQ
HDKVCSNTCR

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1oqj:A 90 90 1.0000 1.0000 1.0000 5.70e-65 1oqj:B
2 8j71:A 99 69 0.3000 0.2727 0.3913 4.34e-08 8j70:A, 8j70:B, 8j71:B
3 6ueb:A 2099 63 0.2444 0.0105 0.3492 0.59
4 5fgn:A 536 55 0.2111 0.0354 0.3455 1.9 4kav:A, 4kay:A, 4kay:B
5 6r9n:A 233 57 0.1889 0.0730 0.2982 1.9 6r9n:B
6 6sj8:A 305 24 0.1111 0.0328 0.4167 2.7 6sj8:B, 6sjn:A, 6sjo:A, 6sjr:A, 6sjr:B, 6sjs:A, 6sjs:B, 6sk4:A, 6sk4:B, 6sk4:C, 6sk4:D
7 6qwo:B 253 50 0.1556 0.0553 0.2800 3.0 6qwo:A
8 1hr6:D 443 24 0.1111 0.0226 0.4167 3.3 1hr6:B, 1hr6:F, 1hr6:H, 1hr7:B, 1hr7:D, 1hr7:F, 1hr7:H, 1hr8:B, 1hr8:D, 1hr8:F, 1hr8:H, 1hr9:B, 1hr9:D, 1hr9:F, 1hr9:H
9 6ep2:K 204 72 0.1778 0.0784 0.2222 4.3 6ep0:A, 6ep0:B, 6ep2:A, 6ep2:B, 6ep2:C, 6ep2:D, 6ep2:E, 6ep2:F, 6ep2:G, 6ep2:H, 6ep2:I, 6ep2:J, 6ep2:L, 6ep5:A, 6ep5:B, 6ep5:C, 6ep5:D, 6ep5:E, 6ep5:F
10 4e5y:C 290 39 0.1222 0.0379 0.2821 5.2
11 6e0s:A 264 38 0.1556 0.0530 0.3684 6.3
12 4d7e:C 377 40 0.1556 0.0371 0.3500 7.8
13 4dxb:A 637 28 0.1111 0.0157 0.3571 7.9 4dxb:B, 4dxc:A
14 4d7e:A 396 40 0.1556 0.0354 0.3500 7.9 4d7e:B
15 1ecy:A 142 26 0.1222 0.0775 0.4231 9.3
16 2v1z:A 270 32 0.1111 0.0370 0.3125 9.5 1axb:A, 1bt5:A, 8de0:A, 8de0:B, 8de0:C, 8de0:D, 8de1:A, 8de1:B, 8de1:C, 8de1:D, 8de2:A, 8de2:B, 8de2:C, 8de2:D, 1erm:A, 1ero:A, 1erq:A, 1esu:A, 1fqg:A, 1jvj:A, 1jwv:A, 1jwz:A, 1li0:A, 1m40:A, 1nxy:A, 1ny0:A, 1nym:A, 1nyy:A, 4opz:A, 4oq0:A, 4oqg:A, 4oqg:B, 4oqg:C, 4oqg:D, 4oqg:F, 4oqh:A, 1pzo:A, 1pzp:A, 7qlp:A, 7qlp:C, 7qlp:D, 7qlp:E, 7qnk:A, 7qnk:B, 7qnk:C, 7qnk:D, 7qnk:E, 4rva:A, 1tem:A, 2v20:A, 1xpb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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