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BioLiP
>protein
DLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQ

The query sequence (length=48) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4rt4:D 52 48 1.0000 0.9231 1.0000 8.66e-29 4riq:A, 4riq:B, 4riq:D, 4riq:E, 4riq:G, 4riq:H, 4riq:J, 4riq:K, 4riq:Z, 4riq:N, 4riq:P, 4riq:Q, 4riq:S, 4riq:T, 4riq:V, 4rt4:A, 4rt4:B
2 6ven:P 42 38 0.3125 0.3571 0.3947 3.49e-05
3 6z0p:A 242 40 0.3333 0.0661 0.4000 1.8 6z0p:B
4 3nwn:A 308 36 0.2500 0.0390 0.3333 3.1
5 5h7y:A 278 18 0.2083 0.0360 0.5556 3.8
6 7jrj:I 327 26 0.2083 0.0306 0.3846 4.4
7 3csq:D 326 34 0.2083 0.0307 0.2941 6.3 3csq:A, 3csq:B, 3csq:C
8 7nii:A 663 23 0.1875 0.0136 0.3913 10.0 7nii:D, 7nii:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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