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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DLPDVTLSLCGGLSISKEKFMEHIITYHEFAENPGLIDNPNLVIRIYNRYYNWALAAPMILSLQVFQKSLPKATVESWVK
DK

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kiq:E 83 82 1.0000 0.9880 1.0000 2.48e-58 7kiq:A, 7kiq:B, 7kiq:D, 7kiq:F, 7kiq:G, 7kiq:H, 7kiq:I, 7kiq:J
2 7kil:A 88 86 0.5854 0.5455 0.5581 2.54e-35
3 7c86:A 296 48 0.2073 0.0574 0.3542 0.88 6csn:A, 6cso:A, 7e6x:A, 7e6y:A, 7e6z:A, 7e70:A, 7e71:A, 3ug9:A, 4yzi:A
4 5b0w:A 261 18 0.1098 0.0345 0.5000 1.2 3a7k:A, 3a7k:D, 3a7k:B, 3abw:A, 3abw:D, 3abw:B, 5b0w:E, 5b0w:B, 5b0w:F, 5b0w:D, 5b0w:G, 5etz:A, 5etz:B, 5etz:D, 3qbg:A, 3qbg:B, 3qbg:D, 3qbi:A, 3qbi:B, 3qbi:D, 3qbk:A, 3qbk:D, 3qbk:B, 3qbl:A, 3qbl:B, 3qbl:D, 4qry:A, 4qry:E, 4qry:B, 4qry:F, 4qry:C, 4qry:G, 3vvk:A, 3vvk:D, 3vvk:B, 3vvk:E, 3vvk:C, 3vvk:F
5 6gys:A 421 23 0.1098 0.0214 0.3913 2.1
6 6so9:A 112 29 0.1220 0.0893 0.3448 2.5
7 5ahz:A 243 15 0.1098 0.0370 0.6000 3.1 5ahy:A, 1e12:A, 5g36:A, 2jaf:A, 2jag:A
8 8jh0:B 265 29 0.1341 0.0415 0.3793 4.3 8jh0:A
9 6wcd:A 314 67 0.2073 0.0541 0.2537 6.5
10 6dlu:P 747 54 0.1585 0.0174 0.2407 8.8 2aka:B, 5d3q:A, 5d3q:B, 6dlu:B, 6s9a:B, 2x2e:A, 2x2e:D, 2x2f:A, 2x2f:D, 3zyc:A, 3zyc:D
11 8egs:Y 586 25 0.1463 0.0205 0.4800 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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