Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DLPDVTLSLCGGISKEKFMEHIITYHEFAENPGLIDNPNLVIRIYNRYYNWALAAPMILSLQVFQKSLPKATVESWVKDK

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kiq:E 83 82 1.0000 0.9639 0.9756 4.56e-55 7kiq:A, 7kiq:B, 7kiq:D, 7kiq:F, 7kiq:G, 7kiq:H, 7kiq:I, 7kiq:J
2 7kil:A 88 86 0.5750 0.5227 0.5349 8.74e-34
3 7c86:A 296 48 0.2125 0.0574 0.3542 0.85 6csn:A, 6cso:A, 7e6x:A, 7e6y:A, 7e6z:A, 7e70:A, 7e71:A, 3ug9:A, 4yzi:A
4 5b0w:A 261 18 0.1125 0.0345 0.5000 0.98 3a7k:A, 3a7k:D, 3a7k:B, 3abw:A, 3abw:D, 3abw:B, 5b0w:E, 5b0w:B, 5b0w:F, 5b0w:D, 5b0w:G, 5etz:A, 5etz:B, 5etz:D, 3qbg:A, 3qbg:B, 3qbg:D, 3qbi:A, 3qbi:B, 3qbi:D, 3qbk:A, 3qbk:D, 3qbk:B, 3qbl:A, 3qbl:B, 3qbl:D, 4qry:A, 4qry:E, 4qry:B, 4qry:F, 4qry:C, 4qry:G, 3vvk:A, 3vvk:D, 3vvk:B, 3vvk:E, 3vvk:C, 3vvk:F
5 1nsj:A 205 45 0.1750 0.0683 0.3111 1.4 1lbm:A
6 5ahz:A 243 34 0.1625 0.0535 0.3824 1.5 5ahy:A, 1e12:A, 5g36:A, 2jaf:A, 2jag:A
7 6so9:A 112 29 0.1250 0.0893 0.3448 2.5
8 8jh0:B 265 29 0.1375 0.0415 0.3793 4.1 8jh0:A
9 6gys:A 421 21 0.1125 0.0214 0.4286 5.3
10 4z87:A 498 51 0.2125 0.0341 0.3333 7.3 5tc3:A, 5tc3:B, 4z87:B, 4z87:C, 4z87:D
11 5mcp:E 387 53 0.2125 0.0439 0.3208 8.5 5mcp:G
12 8egs:Y 586 25 0.1500 0.0205 0.4800 8.6

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218