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BioLiP
>protein
DLKFDDDWKKSNVAVHLASLFGWVIPSASPCPAFPDNASLFKVFSDRISENLAHFPTGPSADDPIWLYMLTWHMGLFACM
MFGQIGVQARKQGYFG

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yca:O 96 96 1.0000 1.0000 1.0000 5.08e-69
2 7dz7:O 97 91 0.4896 0.4845 0.5165 9.51e-29 7d0j:O, 7dz8:O
3 8wgh:O 89 92 0.4167 0.4494 0.4348 5.17e-24
4 8htu:O 90 92 0.4062 0.4333 0.4239 8.54e-23 7ksq:O, 7ku5:O, 7xqp:O
5 6zzx:O 87 78 0.4062 0.4483 0.5000 8.63e-22
6 6sl5:O 86 77 0.3854 0.4302 0.4805 1.43e-21
7 8j6z:O 86 88 0.3646 0.4070 0.3977 1.04e-19
8 7y5e:ON 92 74 0.3438 0.3587 0.4459 1.41e-16 7y5e:O2, 7y7a:O7, 7y7a:Oo
9 6fos:O 98 86 0.3646 0.3571 0.4070 4.52e-15 7blz:O, 8wey:O, 5zgb:O, 5zgh:O
10 5zji:O 76 92 0.3333 0.4211 0.3478 4.76e-13
11 8wm6:O 104 73 0.3333 0.3077 0.4384 8.44e-13 8wmv:O, 8wmw:O
12 7y7b:O 99 80 0.3021 0.2929 0.3625 1.85e-10 7y8a:O
13 7ui9:w 103 63 0.1771 0.1650 0.2698 0.46 5sva:X, 7uif:w, 7uig:w, 7uio:Aw, 7uio:Bw
14 7qqk:A 433 65 0.1771 0.0393 0.2615 0.70 7qqk:B, 7qqk:C, 7qqk:D
15 1l8x:B 354 35 0.1354 0.0367 0.3714 1.4
16 6qsi:A 525 42 0.1979 0.0362 0.4524 1.7 6qsi:B
17 9ayh:A 1056 40 0.1146 0.0104 0.2750 3.1 9ayg:A, 9ayj:A, 9ayk:A, 9ayl:A
18 2uw1:B 338 34 0.1458 0.0414 0.4118 3.7 2uw1:A
19 2c8s:A 149 53 0.1771 0.1141 0.3208 5.2
20 6bk5:A 323 37 0.1146 0.0341 0.2973 7.2
21 8rjc:7 179 13 0.0938 0.0503 0.6923 7.4 8bf9:G, 8btk:TC, 8rjd:7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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