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BioLiP
>protein
DLKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1zw8:A 64 64 1.0000 1.0000 1.0000 1.39e-43
2 2rpc:A 155 75 0.3125 0.1290 0.2667 0.39 2ej4:A
3 6cst:A 446 25 0.1406 0.0202 0.3600 0.62 6brx:A, 6brx:B, 6bs1:A, 6bs1:B, 6cst:B, 3in5:A, 3in5:B, 7nv0:A, 7nv1:A, 2oh2:A, 2oh2:B, 3pzp:A, 3pzp:B, 5t14:A, 5t14:B, 4u6p:A, 4u6p:B, 4u7c:A, 4u7c:B, 5w2a:A, 5w2a:B, 5w2c:A, 5w2c:B, 2w7o:B, 2w7o:A, 2w7p:B, 2w7p:A
4 2gli:A 155 62 0.2656 0.1097 0.2742 1.1 7t91:A, 7t91:B
5 2gli:A 155 24 0.1406 0.0581 0.3750 2.8 7t91:A, 7t91:B
6 1tf6:D 182 61 0.2656 0.0934 0.2787 1.4 2hgh:A, 2j7j:A, 1tf3:A, 1tf6:A, 1un6:C, 1un6:B, 1un6:D
7 7wx5:A 288 66 0.2656 0.0590 0.2576 1.5 7wx6:A, 7wx7:A
8 5l3t:A 294 33 0.1875 0.0408 0.3636 4.2
9 4qht:C 248 52 0.1875 0.0484 0.2308 4.7 6luf:A, 6luf:B, 6luf:C, 6luf:D, 6luf:E, 6luf:F, 6luf:G, 4qht:A, 4qht:B, 4qht:D, 4qht:E, 4qht:F, 4qht:G
10 7bre:B 163 35 0.1719 0.0675 0.3143 5.2 7bre:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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