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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DLIPAPPLSKVPLQQNFQDNQFHGKWYVVGLAGNEVLREDKDPMKMWATIYELEEDKSYNVTIVMPLAEKCEYLFQTFVP
GSQPGEFTLGTSGLVRVVSTNYNQHAMVFFKVVWQNREVFWVTLYGRTKELTSELKENFIRFSKSLGLPENHIVFPVPID
QCID

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4qae:B 175 172 1.0000 0.9371 0.9535 7.97e-120 4qae:A, 4qae:C, 4qae:D, 4qae:F, 4qae:E
2 6z2c:A 178 172 0.8720 0.8034 0.8314 5.59e-100 6z2c:B, 6z2c:C
3 6qmu:A 184 172 0.8659 0.7717 0.8256 1.03e-99 3by0:A, 3by0:B, 3by0:C, 3cbc:A, 3cbc:B, 3cbc:C, 3cmp:A, 3cmp:B, 3cmp:C, 1dfv:A, 1dfv:B, 3fw4:A, 3fw4:C, 3fw5:A, 3fw5:B, 3fw5:C, 3hwe:A, 3hwe:B, 3hwe:C, 3hwf:A, 3hwf:B, 3hwf:C, 3hwg:A, 3hwg:B, 3hwg:C, 3i0a:A, 3i0a:B, 3i0a:C, 4k19:A, 4k19:B, 4k19:C, 3k3l:A, 3k3l:C, 5khp:A, 5khp:B, 5khp:C, 5kic:A, 5kic:B, 5kic:C, 5kid:A, 5kid:B, 5kid:C, 1l6m:A, 1l6m:B, 1l6m:C, 4mvi:A, 4mvk:A, 4mvl:A, 4mvl:B, 4mvl:C, 4mvl:D, 3pec:C, 3ped:A, 3ped:B, 3ped:C, 6qmu:B, 3t1d:A, 3t1d:B, 3t1d:C, 3tf6:A, 3tf6:B, 3tf6:C, 3tzs:A, 3tzs:B, 3tzs:C, 3u0d:A, 3u0d:B, 3u0d:C, 3u0d:D, 8uyn:A, 8uyn:B, 8uyn:C, 8uz9:A, 8uz9:B, 8uz9:C, 1x71:A, 1x71:B, 1x71:C, 1x89:A, 1x89:B, 1x89:C, 1x8u:A, 1x8u:B, 1x8u:C, 4zfx:A, 4zfx:C, 4zhc:A, 4zhc:B, 4zhc:C, 4zhd:A, 4zhd:B, 4zhd:C, 4zhf:A, 4zhf:B, 4zhf:C, 4zhf:D, 4zhf:E, 4zhf:F, 4zhg:A, 4zhg:B, 4zhg:C, 4zhg:D, 4zhg:E, 4zhg:F, 4zhh:A, 4zhh:B, 4zhh:C, 4zhh:D, 4zhh:E, 4zhh:F
4 6gr0:A 173 172 0.8659 0.8208 0.8256 7.14e-98 6gr0:B, 6gr0:C
5 5nkn:A 172 171 0.8476 0.8081 0.8129 1.23e-97 6z6z:A
6 4iaw:A 180 172 0.8232 0.7500 0.7849 6.53e-94 3dsz:A, 3dsz:B, 4iaw:B, 4iaw:C, 4iax:A
7 2ktd:A 167 158 0.3354 0.3293 0.3481 2.56e-21
8 4imo:A 155 152 0.3110 0.3290 0.3355 3.76e-20
9 8aej:A 160 154 0.2195 0.2250 0.2338 8.37e-12
10 2a2g:A 158 147 0.2134 0.2215 0.2381 7.81e-10 2a2g:B, 2a2g:C, 2a2g:D
11 2kt4:B 157 117 0.2378 0.2484 0.3333 1.08e-09 2lbv:A
12 3sao:A 150 118 0.2317 0.2533 0.3220 2.54e-07 3sao:B
13 3kff:A 152 148 0.1951 0.2105 0.2162 1.43e-06 3kfg:A, 3kfh:A, 3kfi:A
14 2dm5:A 157 153 0.2195 0.2293 0.2353 4.33e-05 1i05:A, 1jv4:A, 2nnd:A, 1qy1:A, 1qy2:A, 1yp6:A, 1znd:A, 1zne:A, 1zng:A, 1znh:A, 1znl:A
15 2qos:C 173 156 0.2134 0.2023 0.2244 1.15e-04 2ovd:A
16 1gm6:A 158 153 0.1829 0.1899 0.1961 1.80e-04
17 7w6x:A 447 75 0.1280 0.0470 0.2800 0.077
18 4ubf:A 309 82 0.1402 0.0744 0.2805 0.39
19 2ra6:C 143 140 0.1951 0.2238 0.2286 0.46 2r74:A, 2r74:B, 2ra6:A, 2ra6:B, 2ra6:D
20 1lnm:A 160 137 0.2134 0.2188 0.2555 2.8 1lke:A
21 3k30:A 684 46 0.0915 0.0219 0.3261 4.4 3k30:B
22 4dq5:A 164 37 0.0610 0.0610 0.2703 5.9 4dq5:B, 4dqj:A
23 4zpl:A 316 51 0.0915 0.0475 0.2941 6.2
24 2hzq:A 166 18 0.0488 0.0482 0.4444 8.1
25 1iiu:A 174 179 0.2134 0.2011 0.1955 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218