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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DKYTALIHDENFSTLTLNVSRYPKSLAYWEKLLNYIVKASAPICKSTEPQLLKLIRCTYSSMLNEFPYLENYYIDFALLE
YKLGNVSMSHKIFQRGLQAFNQRSLLLWTSYLKFCNNVISHQKQLFKKYETAEEYVGLHFFSGEFWDLYLEQISSRCTSS
KKYWNVLRKILEIPLHSFSKFYALWLQRIDDIMDLKQLSQLTSKDELLKKLKIDINYSGRKGPYLQDAKKKLKKITKEMY
MVVQYQVLEIYSIFESKIYINYYTSPETLVSSDEIETWIKYLDYTITLQTDSLTHLNFQRALLPLAHYDLVWIKYSKWLI
NSKNDLLGAKNVLLMGLKFSLKKTEIIKLLYSVICKLNEYVLLRNLLEKIESSYSDNVENVDDFEIFWDYLQFKTFCQNS
LYSSRYSDSQSNGLLNKELFDKVWKRLSCKEKKSGQEILLNNLVQFYSKDTVEFVEKNIFQKIIEFGWEYYLQNGMFWNC
YCRLIYFDTSRSYLDKRQYIVRKIWPQIDKKFAQSVLPSLTEFCESYFPEEMDTLEEMF

The query sequence (length=539) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6n7p:D 544 539 1.0000 0.9908 1.0000 0.0 6g90:E, 6n7r:D, 6n7x:D, 7oqc:E, 7oqe:E, 8w2o:D, 5zwn:T
2 5zwn:U 583 160 0.0761 0.0703 0.2562 7.84e-09 7oqc:D, 7oqe:D
3 7d4i:B6 377 103 0.0594 0.0849 0.3107 0.042 7ajt:UF, 7d5s:B6, 7d5t:B6, 7d63:B6, 6ke6:B6, 6lqp:B6, 6lqq:B6, 6lqr:B6, 6lqs:B6, 6lqt:B6, 6lqu:B6, 6lqv:B6, 6zqa:UF, 6zqb:UF, 6zqc:UF
4 7suk:LP 359 103 0.0594 0.0891 0.3107 0.043 5wlc:LP
5 5gmk:d 549 176 0.0742 0.0729 0.2273 0.27 5gm6:d, 5wsg:d
6 5ylz:I 517 176 0.0742 0.0774 0.2273 0.51
7 6bk8:T 483 176 0.0742 0.0828 0.2273 0.82 6exn:S, 5lj3:S, 5lj5:S, 5mps:S, 5mq0:S
8 6j6g:d 566 176 0.0742 0.0707 0.2273 0.83 7b9v:S, 6j6h:d, 6j6n:d, 6j6q:d, 5lqw:R
9 6j6g:d 566 83 0.0464 0.0442 0.3012 6.9 7b9v:S, 6j6h:d, 6j6n:d, 6j6q:d, 5lqw:R
10 7dco:J 554 122 0.0538 0.0523 0.2377 1.9 5y88:I
11 8c6j:S 635 59 0.0260 0.0220 0.2373 3.9 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
12 8i0w:J 571 59 0.0260 0.0245 0.2373 4.0 7dvq:J, 8i0u:J, 8i0v:J, 6icz:J, 6id0:J, 6id1:J, 6qdv:S, 7w59:J, 7w5a:J, 7w5b:J, 5xjc:J, 5yzg:J, 5z56:J, 5z57:J, 5z58:J
13 5a6k:A 626 122 0.0501 0.0431 0.2213 4.3 5a6a:A, 5a6b:A, 5a6b:B, 5a6b:C, 5a6b:D, 5a6k:B, 5ac4:A, 5ac4:B, 5ac5:A, 5ac5:B
14 5a6a:B 597 122 0.0501 0.0452 0.2213 4.7 5a69:A
15 7zy4:B 306 146 0.0594 0.1046 0.2192 5.2 7zy4:A
16 7kz7:A 424 65 0.0334 0.0425 0.2769 5.4 6f47:A, 6g8u:A, 6g8v:A
17 8dgf:A 1541 43 0.0223 0.0078 0.2791 6.7 8dgf:B, 8dgf:C, 8dgf:D
18 6p2m:A 696 49 0.0315 0.0244 0.3469 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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