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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DKQWERFLVPYRQAVEELKVKLKGIRTLYEYEDHSPIEFVTGRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMCQFV
DDIQIVKEMLFARKDFTVVRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSLNYKYSGNIPEKVKLRLQRAS
EAASRLDEEMSEIRGEVQEA

The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ded:A 196 195 1.0000 0.9184 0.9231 3.47e-127 5ded:D, 5ded:B, 5ded:C, 5ded:E, 5ded:F, 5ded:G, 5ded:H, 5f2v:V, 5f2v:X, 5f2v:T, 5f2v:S, 5f2v:Y, 5f2v:O, 5f2v:Z, 5f2v:W, 5f2v:U, 5f2v:P, 5f2v:R, 5f2v:Q
2 6ewz:A 202 187 0.3111 0.2772 0.2995 4.19e-23 6ewz:B, 6ex0:A, 6ex0:B, 6fgx:A, 6fgx:B
3 8fkw:SU 562 108 0.1611 0.0516 0.2685 1.3 8fkv:SU, 8fkx:SU, 8fky:SU
4 4d1q:H 509 51 0.1000 0.0354 0.3529 1.5 4d1q:A, 4d1q:B, 4d1q:G
5 8edg:A 550 51 0.1000 0.0327 0.3529 1.5 6dww:A, 6dwy:A, 6dwz:A, 6dwz:E, 6dx0:A, 8eb5:A, 8edg:C, 8edg:I, 8edg:E, 8edg:G, 8edg:K, 8sjd:C, 8sjd:D, 8sjd:B, 8sjd:A
6 5xnx:D 321 119 0.1667 0.0935 0.2521 2.7 5xnx:C
7 7ly7:B 329 54 0.0778 0.0426 0.2593 5.4 7ly4:A, 7ly4:D, 7ly5:B, 7ly6:A
8 5lbp:A 196 41 0.0667 0.0612 0.2927 9.6 5l9k:A, 5l9k:B, 5l9q:A, 5l9q:B, 5lau:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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