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BioLiP
>protein
DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEAN

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1e7j:A 74 71 1.0000 0.9595 1.0000 1.62e-46 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
2 1j5n:A 93 62 0.3803 0.2903 0.4355 2.03e-10
3 5jh0:D 157 69 0.3521 0.1592 0.3623 2.92e-09 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
4 5jh0:D 157 68 0.1972 0.0892 0.2059 1.0 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
5 6cij:N 133 39 0.2676 0.1429 0.4872 1.85e-08 5zdz:N, 5ze1:N, 5ze2:N
6 6cij:N 133 68 0.3239 0.1729 0.3382 9.16e-05 5zdz:N, 5ze1:N, 5ze2:N
7 2gzk:A 159 70 0.4225 0.1887 0.4286 2.41e-08 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
8 2gzk:A 159 50 0.2113 0.0943 0.3000 1.65e-05 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
9 6cik:N 90 62 0.3662 0.2889 0.4194 1.55e-07 6cg0:N, 6cim:N
10 1gt0:D 79 46 0.2254 0.2025 0.3478 2.62e-06 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
11 6t78:A 77 43 0.2254 0.2078 0.3721 6.40e-06 6t78:B, 3u2b:C
12 4s2q:D 76 43 0.2113 0.1974 0.3488 8.58e-06 4euw:A
13 4qr9:A 75 71 0.2958 0.2800 0.2958 1.26e-05 4qr9:B
14 6l6y:D 80 41 0.1831 0.1625 0.3171 1.51e-04 4a3n:A, 3f27:D, 6l6y:F
15 6hb4:A 197 44 0.2113 0.0761 0.3409 8.67e-04 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
16 6hb4:A 197 69 0.3239 0.1168 0.3333 0.63 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
17 5ze0:N 118 60 0.3521 0.2119 0.4167 0.002 1ckt:A
18 4y60:C 76 41 0.1549 0.1447 0.2683 0.008
19 7m5w:A 138 66 0.2535 0.1304 0.2727 0.013 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
20 4bmv:C 258 38 0.1831 0.0504 0.3421 1.4 4bmv:A, 4bmv:B, 4bmv:D, 4bmv:E, 4bmv:F, 4bmv:G, 4bmv:H, 4bmv:I, 4bmv:J
21 2lef:A 86 41 0.1549 0.1279 0.2683 5.4
22 2fws:A 139 39 0.1690 0.0863 0.3077 6.9
23 1r44:A 202 38 0.1549 0.0545 0.2895 7.0 1r44:B, 1r44:C, 1r44:D, 1r44:E, 1r44:F
24 3t95:A 314 18 0.0986 0.0223 0.3889 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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