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BioLiP
>protein
DHLVIEANINAPLGKVVNLLYGEDVSYYERILKAQKNFEISPIPNNFLTKKIRDYAYTKPLSGSIGPSKTKCLITDTLEH
YDLEDYVKVLSITKNPDVPSGNIFSVKTVFLFSWDKNNSTKLTVYNSVDWTGKSWIKSMIEKGTFDGVADTTKIMISEIK
KILSD

The query sequence (length=165) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6cay:A 165 164 0.9939 0.9939 1.0000 2.64e-118 6cay:B
2 5ys0:B 164 158 0.4364 0.4390 0.4557 6.67e-47 5ys0:A
3 6bym:A 200 162 0.4182 0.3450 0.4259 2.11e-40 6bym:B
4 6gqf:A 168 163 0.2121 0.2083 0.2147 4.45e-04 6gqf:B, 6gqf:C, 6gqf:D
5 8tug:A 1367 51 0.0848 0.0102 0.2745 1.1 8tvp:A, 8tvq:A, 8tvv:A, 8tvw:A, 8tvx:A
6 1ep1:B 261 47 0.0848 0.0536 0.2979 3.0 1ep2:B, 1ep3:B
7 5eqv:A 336 32 0.0909 0.0446 0.4688 3.7
8 2b4k:A 617 98 0.1636 0.0438 0.2755 3.7 2b4k:B, 2b4k:D, 1nx9:A, 1nx9:B, 1nx9:C, 1nx9:D
9 3uce:A 219 84 0.1333 0.1005 0.2619 3.8 3uce:B, 3uce:C, 3uce:D
10 6ir9:W 275 35 0.0848 0.0509 0.4000 8.4 6j4w:W, 6j4x:W, 6j4y:W, 6j4z:W, 6j50:W, 6j51:W, 8jh2:W, 7wbv:W, 7wbw:W, 7wbx:W
11 2y3a:A 976 86 0.1030 0.0174 0.1977 8.8
12 5xon:W 329 35 0.0848 0.0426 0.4000 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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