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BioLiP
>protein
DGEIFYLPNLNPDQLCAFFHSVHDDPSQSANLLAEAKKLNDAQAPK

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4bxl:A 46 46 1.0000 1.0000 1.0000 1.09e-28 4bxl:B, 5k5g:B, 5k5g:C, 2otk:E, 2otk:F
2 8cpl:C 499 44 0.7391 0.0681 0.7727 5.76e-16 8cpl:A, 8cpl:B, 8cpl:D, 1lp1:B, 4uox:A, 4uox:B, 4uox:C, 4uox:D, 4uoy:A, 4uoy:B, 4uoy:C, 4uoy:D
3 5cbn:A 176 43 0.7174 0.1875 0.7674 6.75e-16
4 5h75:D 225 42 0.6957 0.1422 0.7619 1.90e-15 5h75:A, 5h75:B, 5h75:C, 1p3y:1
5 5h7d:E 113 44 0.6957 0.2832 0.7273 3.47e-15 5h7d:F, 5h7d:G, 5h7d:H, 5h7d:K, 5h7d:L, 5h7d:O, 5h7d:P
6 5coc:A 124 42 0.6739 0.2500 0.7381 1.81e-14
7 5ewx:B 214 42 0.6087 0.1308 0.6667 1.98e-12 5ewx:A
8 8jxr:C 341 43 0.5000 0.0674 0.5349 4.12e-09
9 6fgo:F 67 53 0.5870 0.4030 0.5094 5.21e-09 6fgo:E, 6fgo:G, 6fgo:H
10 7rxc:B 439 44 0.5000 0.0524 0.5227 9.54e-09 7rxd:B
11 8pvr:B 509 34 0.3043 0.0275 0.4118 0.97 8pvr:A
12 6fxc:Ab 226 39 0.2826 0.0575 0.3333 2.7 7bge:b, 8bh6:b, 8bh7:b, 8byv:b, 6fxc:Bb, 7kwg:b, 5li0:b, 5nd8:b, 5nd9:b, 5ngm:Ab, 7nhl:c, 7nhm:c, 8p2f:c, 8p2g:c, 8p2h:c, 7p48:b, 6s0x:b, 6s13:b, 8y38:b, 8y39:b, 6yef:b
13 5mob:A 193 34 0.2609 0.0622 0.3529 3.5 7z1q:A, 7z1r:D000, 7z1s:A
14 4c1t:A 396 48 0.3478 0.0404 0.3333 4.7 4c1u:A, 3zkk:A, 3zkl:A
15 7qep:M3 161 23 0.2391 0.0683 0.4783 6.4
16 6c9g:A 386 33 0.2826 0.0337 0.3939 8.7 6c9f:A, 6c9j:A, 6e4t:A, 6e4u:A, 6e4w:A, 7jhg:A, 5kq5:A, 7m74:A, 4qfg:A, 4qfr:A, 4qfs:A, 5t5t:A, 5ufu:A
17 6d6j:B 113 34 0.3043 0.1239 0.4118 8.8 6d6j:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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