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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DGDPITSTEEIPFDKKREFDPNMAPGTEKVVQKGEPGTKTITTPTTKNPMTGEKGEGEPTEKITKQPVDEIVHYGGEQIP
QGHKDEFDPNAPVDSKTEVPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDSITSTEEIPFDKKREFDPNMAPGTEKVVQK
GEPGTKTITTPTTKNPMTGEKVGEGKSTEKVTKQPVDEIVEYGPT

The query sequence (length=205) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4fun:A 206 205 0.9707 0.9660 0.9707 1.24e-134 4fum:A, 4fuo:A, 4fup:A, 4fup:B
2 4fun:A 206 77 0.3463 0.3447 0.9221 6.91e-41 4fum:A, 4fuo:A, 4fup:A, 4fup:B
3 8deo:A 454 204 0.8390 0.3789 0.8431 2.18e-104 8deo:B, 8g1l:A, 7sie:A
4 8deo:A 454 77 0.3024 0.1366 0.8052 2.95e-32 8deo:B, 8g1l:A, 7sie:A
5 3tiq:B 214 197 0.6000 0.5748 0.6244 1.17e-81 3tiq:A
6 3tiq:B 214 77 0.2195 0.2103 0.5844 9.95e-21 3tiq:A
7 5lsj:G 102 46 0.0829 0.1667 0.3696 1.0 5lsj:N
8 1ttx:A 109 44 0.0683 0.1284 0.3182 1.9
9 7wrx:H 594 111 0.1366 0.0471 0.2523 2.3 7wrx:A, 7wrx:B, 7wrx:C, 7wrx:D, 7wrx:E, 7wrx:F, 7wrx:G, 7wrx:I, 7wrx:J, 7wrx:K, 7wrx:L
10 4xev:A 148 65 0.0829 0.1149 0.2615 2.4 3gm1:A, 3gm1:B, 4r32:A, 3u3f:A, 3u3f:B, 3u3f:C, 3u3f:D, 4xef:A, 4xef:D, 4xek:A, 4xev:D
11 3a09:A 490 92 0.1220 0.0510 0.2717 3.8 3vlu:A, 3vlv:A, 3vlw:A, 3vlw:B, 1y3n:A, 1y3p:A, 1y3q:A
12 4r43:A 601 21 0.0488 0.0166 0.4762 8.2 5i67:A, 4rcg:A, 4wie:A, 4wiu:A, 4wl8:A, 4wou:A, 4wpt:A, 4wpu:A, 4wpv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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