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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DFLRSLDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL
VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQF
E

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3pse:A 164 161 1.0000 0.9817 1.0000 2.79e-121 3phw:A, 3phw:C, 3phw:E, 3phw:G, 3phx:A, 3pt2:A, 5v5h:A
2 6oat:A 158 157 0.5652 0.5759 0.5796 3.25e-69 6oat:C
3 7jms:C 159 157 0.5342 0.5409 0.5478 9.20e-64 7jms:A, 7jms:E, 7jms:G
4 6oar:A 158 157 0.5590 0.5696 0.5732 3.07e-63 6oar:C, 6oar:E, 6oar:G
5 4hxd:B 157 157 0.5466 0.5605 0.5605 5.86e-63 4hxd:D
6 5jze:A 159 130 0.3168 0.3208 0.3923 8.81e-30 5jze:C
7 5ere:A 540 34 0.0932 0.0278 0.4412 0.38
8 8rzg:A 659 85 0.1739 0.0425 0.3294 1.3 8rzg:B, 8rzg:C, 8rzg:D, 8rzh:A, 8rzh:B, 8rzh:C, 8rzh:D, 8rzi:A, 8rzi:B, 8rzi:C, 8rzi:D, 8rzj:A, 8rzj:B, 8rzj:C, 8rzj:D, 8rzk:A, 8rzk:B, 8rzk:C, 8rzk:D
9 4pmd:A 329 68 0.1180 0.0578 0.2794 1.4 4l4p:A
10 4bos:A 164 78 0.1180 0.1159 0.2436 2.0
11 3wr9:A 416 41 0.0745 0.0288 0.2927 2.2 3wku:A, 3wku:B, 3wpm:A, 3wpm:B, 3wr3:A, 3wr3:B, 3wr4:A, 3wr4:B, 3wr8:A, 3wr8:B, 3wr9:B, 3wra:A, 3wra:B, 3wrb:A, 3wrb:B, 3wrc:A, 3wrc:B
12 7ujd:A 577 60 0.1056 0.0295 0.2833 2.6 7uih:A
13 4v8p:CM 300 70 0.0994 0.0533 0.2286 3.0 4v8p:BM, 4v8p:EM, 4v8p:GM
14 2azq:A 309 71 0.1242 0.0647 0.2817 7.3
15 6dru:A 718 66 0.1118 0.0251 0.2727 8.9 6dru:B
16 5thm:A 520 26 0.0621 0.0192 0.3846 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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