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BioLiP
>protein
DEIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDRFEWNGFSFEVVDMDRTRVDK
ILVQRH

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ded:C 91 86 1.0000 0.9451 1.0000 2.81e-59 3ded:A, 3ded:B, 3ded:D, 3ded:E, 3ded:F
2 2pls:I 86 82 0.4070 0.4070 0.4268 3.88e-20 2pls:G, 2pls:H, 2pls:J
3 2oai:A 80 83 0.3953 0.4250 0.4096 1.16e-18 2r8d:A
4 2p4p:B 77 75 0.2558 0.2857 0.2933 1.98e-08
5 5e1z:B 169 65 0.2093 0.1065 0.2769 0.65 5e1x:A, 5e20:A
6 3lae:A 81 70 0.1860 0.1975 0.2286 0.69
7 8adj:A 515 44 0.2093 0.0350 0.4091 0.70 8adj:B, 8adj:C
8 4ub9:A 467 36 0.1628 0.0300 0.3889 0.82 4ub9:B, 4ub9:C, 4ub9:D, 4ub9:E, 4ub9:F, 4ub9:G, 4wgx:A
9 5yx4:A 232 52 0.1628 0.0603 0.2692 2.1
10 8bns:A 433 83 0.2442 0.0485 0.2530 2.5 8bns:B, 8bns:C, 8bns:D
11 7zgz:X 753 62 0.1977 0.0226 0.2742 3.6 8c7f:B
12 2oas:A 427 31 0.1395 0.0281 0.3871 4.3 2oas:B
13 6xyw:AQ 366 56 0.2209 0.0519 0.3393 4.7
14 6kse:A 607 50 0.1977 0.0280 0.3400 5.6 6kse:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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