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BioLiP
>protein
DEDTYYLQVRGRENFEILMKLKESLELMEL

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2wqj:C 32 30 1.0000 0.9375 1.0000 2.93e-15
2 2wtt:L 46 28 0.9333 0.6087 1.0000 7.84e-14 2wqj:K, 2wqj:Z, 2wtt:N, 2wtt:O, 2wtt:P
3 4d1l:F 38 29 0.5667 0.4474 0.5862 1.71e-05 4cz5:C, 4cz6:D
4 4mzr:A 234 29 0.4333 0.0556 0.4483 0.015 4mzr:B, 4mzr:C, 4mzr:D, 3q01:A, 3q01:B, 3q05:A, 3q05:C, 3q05:B, 3q05:D, 3q06:A, 3q06:C, 3q06:D, 3q06:B, 3ts8:A, 3ts8:B, 3ts8:C, 3ts8:D
5 7bwn:J 280 25 0.4000 0.0429 0.4800 0.28 7bwn:O, 7bwn:C, 7bwn:M, 4gf6:B, 4w74:A, 4w74:B, 4w74:H, 4w74:C, 4w74:D, 4w74:E, 4w76:A, 4w76:B, 4w77:A, 4w77:B, 4w7a:A, 4w7a:B, 4w7c:B, 4w7d:A, 4w7f:A, 4w7r:A, 4w7r:B, 4w7r:C, 4w7r:D
6 7fac:A 524 19 0.2667 0.0153 0.4211 6.5
7 6vmb:E 481 28 0.3667 0.0229 0.3929 9.0 6fkf:D, 6fkf:F, 6fkh:F, 6fkh:B, 6fki:B, 6fki:D, 1kmh:B, 6vmb:D, 6vmb:F, 6vmd:E, 6vmd:D, 6vmd:F, 6vof:E, 6vof:F, 6vog:E, 6vog:F, 6voh:D, 6voh:F, 6voi:D, 6voi:E, 6voi:F, 6voj:D, 6voj:E, 6voj:F, 6vok:D, 6vok:E, 6vok:F, 6vol:D, 6vol:E, 6vol:F, 6vom:D, 6vom:E, 6vom:F, 6von:D, 6von:E, 6von:F, 6voo:E, 6voo:D, 6voo:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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