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BioLiP
>protein
DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDI
EFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHK
EKC

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ovc:A 167 163 1.0000 0.9760 1.0000 2.58e-122 7nw1:AAA, 7nw1:BBB
2 4lp7:D 230 160 0.2331 0.1652 0.2375 1.5 4lp7:A, 4lp7:B, 4lp7:C
3 6mfv:A 641 109 0.1656 0.0421 0.2477 2.3 6mfv:B, 6mfv:C, 6mfv:D
4 1tg7:A 971 43 0.0798 0.0134 0.3023 4.5 1xc6:A
5 2lul:A 164 28 0.0736 0.0732 0.4286 7.5
6 3og2:A 986 33 0.0675 0.0112 0.3333 8.8 3ogr:A, 3ogs:A, 3ogv:A
7 6d8v:A 269 67 0.1411 0.0855 0.3433 9.4
8 6j6h:v 722 47 0.1043 0.0235 0.3617 9.5 6j6n:v, 6j6q:v
9 1x33:C 225 54 0.0859 0.0622 0.2593 10.0 1smv:A, 1smv:B, 1smv:C, 1vak:A, 1vb4:A, 2vq0:A, 2vq0:C, 2vq0:B, 1x33:A, 1x33:B, 1x35:A, 1x35:B, 1x35:C, 1x36:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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