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BioLiP
>protein
DDKKTNWLKRIYRVRPCVKCKVAPRNWKVKNKHLRIYNMCKTCFNNSIDIGDDTYHGHDDWLMYADS

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3dgl:A 69 67 0.9701 0.9420 0.9701 5.76e-44 3dgm:A, 3dgn:A, 3dgo:A, 3lt8:A, 3lt9:A, 3lta:A, 3ltb:A, 3ltc:A, 3ltd:A, 2p05:A, 2p09:A, 1uw1:A
2 2p0x:A 64 56 0.6716 0.7031 0.8036 2.30e-31
3 6k15:H 393 36 0.1642 0.0280 0.3056 6.2 6kw4:H, 6kw5:H, 6v8o:I, 6v92:I
4 1ffy:A 917 35 0.1791 0.0131 0.3429 8.2 1qu2:A, 1qu3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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