Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGF
ESQQTLTRTFKNYFDVPPHKYRMTNMQGESRFLHPL

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1xs9:A 129 116 1.0000 0.8992 1.0000 3.07e-85 1bl0:A
2 7bef:G 106 101 0.3966 0.4340 0.4554 7.29e-32 7beg:G
3 1d5y:A 288 101 0.4397 0.1771 0.5050 8.00e-31 1d5y:B, 1d5y:D, 1d5y:C, 7vwy:G, 7vwz:G, 7vwz:I
4 7w5w:J 107 98 0.3534 0.3832 0.4184 3.85e-27 7w5x:K, 7w5y:K
5 4fe7:A 380 97 0.1983 0.0605 0.2371 1.35e-05
6 3w6v:A 111 94 0.1724 0.1802 0.2128 0.005
7 1wpk:A 146 46 0.1379 0.1096 0.3478 0.010 1adn:A, 1eyf:A, 1u8b:A, 1zgw:A
8 4hf1:A 129 119 0.2328 0.2093 0.2269 0.13 4chu:A, 4hf1:B, 4hf2:A, 4hf2:B
9 3ct8:A 133 35 0.1466 0.1278 0.4857 1.2
10 4chu:B 127 66 0.1379 0.1260 0.2424 1.6
11 4cic:A 138 64 0.1379 0.1159 0.2500 2.1 4cic:B
12 6zu5:LX0 98 70 0.1552 0.1837 0.2571 2.9
13 8pnh:A 386 65 0.1379 0.0415 0.2462 3.2
14 8ro1:L2 362 76 0.1638 0.0525 0.2500 3.8
15 7zw0:sh 776 62 0.1810 0.0271 0.3387 4.5
16 8c41:A 720 63 0.1552 0.0250 0.2857 5.1 8c41:B
17 6u9w:A 562 61 0.1638 0.0338 0.3115 5.5 8tr5:A, 8tr5:B, 8tr5:C, 8trj:A, 8trj:C, 8trj:B, 6u9v:A, 6u9v:B, 6u9v:C, 6u9w:B, 6u9w:C, 8v4s:A, 8v4s:B, 8v4s:C
18 1b02:A 279 79 0.1552 0.0645 0.2278 6.0

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218