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BioLiP
>protein
DAINAPVTCCYNFTNRKISVQRLASYRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQ

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4r8i:A 68 68 1.0000 1.0000 1.0000 1.39e-46
2 2mpm:A 74 65 0.6618 0.6081 0.6923 6.99e-31
3 2ra4:B 65 66 0.6029 0.6308 0.6212 3.42e-27
4 7f1t:A 423 65 0.3676 0.0591 0.3846 9.11e-12 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
5 6fgp:B 68 60 0.2794 0.2794 0.3167 1.60e-07 1b3a:B, 1b3a:A, 5coy:A, 5dnf:C, 5dnf:D, 5dnf:I, 5dnf:A, 5dnf:F, 5dnf:G, 5dnf:H, 1u4l:A, 1u4m:A
6 2hci:A 68 61 0.2794 0.2794 0.3115 2.93e-06
7 7xbx:R 349 57 0.3088 0.0602 0.3684 0.003 7xbw:R
8 1ilp:A 71 39 0.1765 0.1690 0.3077 0.032 1ilq:A, 6xmn:A
9 2nwg:A 68 17 0.1029 0.1029 0.4118 0.40 2nwg:B, 4uai:A
10 6k80:A 213 66 0.2794 0.0892 0.2879 0.61 5gi5:A, 5gi6:A, 5gi7:A, 5gi8:A, 5gi9:A, 5gif:A, 5gig:A, 5gih:A, 5gii:A, 3te4:A
11 2f9m:A 182 43 0.2059 0.0769 0.3256 1.8 4c4p:A, 5c46:F, 5c4g:B, 4d0l:B, 4d0l:D, 4d0l:F, 4d0m:B, 4d0m:D, 4d0m:H, 4d0m:J, 4d0m:N, 4d0m:P, 4d0m:R, 4d0m:T, 4d0m:X, 4d0m:Z, 4d0m:d, 4d0m:h, 2d7c:A, 2d7c:B, 5euq:B, 5ez5:A, 5ez5:B, 2f9l:A, 5fbl:B, 5fbq:B, 5fbr:B, 5fbv:B, 5fbw:B, 2gzd:A, 2gzd:B, 2gzh:A, 2hv8:A, 2hv8:B, 2hv8:C, 6iy1:A, 6iy1:B, 6iy1:C, 6iy1:D, 6iy1:E, 6iy1:F, 5jcz:A, 5jcz:D, 5jcz:I, 4lwz:A, 4lwz:C, 4lx0:A, 4lx0:C, 1oiv:A, 1oiv:B, 1oiw:A, 1oix:A, 4ojk:A, 4ojk:B, 4uj3:A, 4uj3:D, 4uj3:G, 4uj3:J, 4uj3:M, 4uj3:P, 4uj3:S, 4uj3:V, 4uj4:A, 4uj4:D, 4uj4:G, 4uj4:J, 4uj5:A, 4uj5:B, 8vof:B, 1yzk:A
12 7of5:C 338 29 0.1471 0.0296 0.3448 2.9 7of0:C, 7of3:C, 7of7:C
13 7pd3:x 366 29 0.1471 0.0273 0.3448 3.3 4fp9:A, 4fp9:C, 4fp9:D, 4fp9:F, 4fzv:A, 7o9k:A1, 7o9m:A1, 7odr:x, 7ods:x, 7odt:x, 7oic:x, 8pk0:x, 8qsj:x
14 5dwa:A 278 23 0.1176 0.0288 0.3478 4.1 5dwa:B, 5dwb:A, 5dwb:B
15 8qeu:A 304 46 0.2059 0.0461 0.3043 4.3 8qeu:B, 8qeu:C, 8qev:A, 8qev:B, 8qev:C
16 7r50:G 424 43 0.1618 0.0259 0.2558 4.8
17 7r50:O 455 43 0.1618 0.0242 0.2558 4.8 7r50:B, 7r50:C, 7r50:F, 7r50:J, 7r50:K
18 6w9m:A 251 28 0.1471 0.0398 0.3571 8.7 4e2j:A, 4e2j:B, 3gn8:A, 3gn8:B, 6nwk:A, 6nwl:A, 5ufs:B, 5ufs:A, 6w9k:A, 6w9l:A, 7yxc:A, 7yxd:A, 7yxd:D, 7yxd:H, 7yxd:L, 7yxn:A, 7yxn:C, 7yxo:A, 7yxo:C, 7yxo:E, 7yxp:A, 7yxr:A, 7yxr:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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