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BioLiP
>protein
CTSCEDNAPATSYCVECSEPLCETCVEAHQRVKYTKDHTVRST

The query sequence (length=43) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6o5k:A 46 43 1.0000 0.9348 1.0000 9.57e-26 6o5k:B
2 2mvw:A 51 30 0.3256 0.2745 0.4667 0.008 6imq:A, 6imq:B, 6imq:C, 6imq:D, 2mvw:B
3 6uib:A 132 30 0.2558 0.0833 0.3667 1.7
4 2cup:A 101 35 0.2326 0.0990 0.2857 3.1
5 7aap:C 67 39 0.3023 0.1940 0.3333 4.2 7ctt:C
6 8vxa:A 1139 29 0.2791 0.0105 0.4138 4.6 8vxc:A
7 8vxy:B 1161 29 0.2791 0.0103 0.4138 4.6
8 6pe2:A 456 11 0.1628 0.0154 0.6364 5.0 6p5a:A, 6p5a:G, 6pe2:G
9 4oku:B 241 19 0.2093 0.0373 0.4737 5.5 4okr:A, 4okr:B, 4oku:A
10 7p1g:M 347 26 0.2558 0.0317 0.4231 7.5 7p1g:K, 7p1g:L, 7p1g:N, 7p1g:O
11 5xy3:U 97 27 0.1628 0.0722 0.2593 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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