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BioLiP
>protein
CTGIRYSDGSGNLYLARNLDWTSDFGERVVVTPTGYTTKSPFGAVPAIRHAVIGMGIVQEDTPLYFDCGNDAGLAVAGLN
FPGYAQYATEAVDGATNVAAFEFPLWVASQFASVDEVEAALADVVIVDRPINDKYPSSLLHWIIGDSKRAIVVEYTSDGL
HVFDDDVDVLANQPGFGWHHENLRNYLNASPDFPEKIVLNRADLVPFGSGSLMRGIPGDYYSPSRFVRAAYVHAHYPGKS
TEEENVSRAFHTLQQVAMVDGSAAMGSGEFEKTTYTGLFSSRTMTYYWNTYEDPAVRSVAMADHAADGTELVVVLE

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8vsy:B 320 316 1.0000 0.9875 1.0000 0.0 8u7n:B, 8vrx:B, 8vsy:A
2 8esi:A 316 315 0.5601 0.5601 0.5619 8.08e-125 8esi:B, 8esi:C, 8esi:D, 8esi:E, 8esi:F, 8esi:G, 8esi:H, 8ete:A, 8ete:B
3 8etk:A 321 313 0.4051 0.3988 0.4089 2.14e-83 8etk:B, 8ewt:A, 8ewt:B, 7svg:A, 7svg:D
4 2bjf:A 328 317 0.3513 0.3384 0.3502 2.13e-67 2rlc:A
5 5y7p:A 327 314 0.3513 0.3394 0.3535 1.57e-62 8bls:A, 8bls:B, 8bls:C, 8bls:D, 8bls:E, 8bls:F, 8bls:G, 8bls:H, 8blt:A, 8blt:B, 8blt:C, 8blt:D, 8blt:E, 8blt:F, 8blt:G, 8blt:H, 5y7p:F
6 8etf:C 330 316 0.3703 0.3545 0.3703 9.82e-61 8esg:A, 8esg:H, 8etf:H, 8etf:A, 8etf:B, 8etf:D, 8etf:E, 8etf:F, 8etf:G, 8fao:H, 8fao:A, 8fao:B, 8fao:C, 8fao:D, 8fao:E, 8fao:F, 8fao:G
7 7svj:B 326 317 0.3797 0.3681 0.3785 6.12e-59
8 2z71:C 331 316 0.2785 0.2659 0.2785 4.54e-39 2z71:A
9 8esl:A 309 248 0.1867 0.1909 0.2379 0.002 8esl:B, 8esl:C, 8esl:D
10 6uh4:B 326 313 0.2215 0.2147 0.2236 0.21
11 4zu3:B 225 58 0.0633 0.0889 0.3448 1.3 4zu3:A, 4zu3:E, 4zu3:C, 4zu3:D, 4zu3:F
12 9jd2:A 273 80 0.0601 0.0696 0.2375 3.7 9jhv:A, 1wta:A
13 1zt2:A 327 52 0.0538 0.0520 0.3269 4.8 5of3:A, 5of3:D, 5ofn:A, 1zt2:C
14 2f02:A 319 63 0.0633 0.0627 0.3175 4.9 2f02:B
15 4jo0:A 522 141 0.1108 0.0670 0.2482 5.0 5kik:A, 5kil:A
16 2obv:A 384 50 0.0506 0.0417 0.3200 5.1 1o90:A, 1o90:B, 1o92:A, 1o92:B, 1o93:A, 1o93:B, 1o9t:A, 1o9t:B, 8swa:A
17 3fv9:C 374 75 0.0443 0.0374 0.1867 9.8 3fv9:A, 3fv9:E, 3fv9:F, 3fv9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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