Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CSLPFLAKICQKIKLAIKNSVPIKDVDSDKYSIFPTLRGYHWRGRDCNDSDKTVYPGRRPDNWDAHRDSNCNGIWGVDPK
DGIPYEKKFCEGSQPRGIILLGDAAGAHFHIPPEWLTVSQMSVNSFLNLPTAVTNELDWPQLSGTTGFLDSENSIYLRLR
KRNRCNHRDYQNISKNGASSRNVKSLIESLSRNQLLDHPAIVIYAMIGNDVCNGRKTDPVSAMTTPEQLYANVLKMLEAL
NSHLPTGSHVILYGLAHGAFLWDTLHSRYHPLGQLNKDVTYTQLYSFLGCLQVSPCPGWMSANETLRALTSERAQQLSET
LRKIAASKKFTNFNLFYLDFAFQEVVEEWQKMGGQPWELIEAVDGFHPNEVALLLFADQLWEKVQRQWPDVLGKENPFNP
QIEEVFGDQGGH

The query sequence (length=412) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5w7b:C 413 413 1.0000 0.9976 0.9976 0.0 5w7a:B, 5w7b:D
2 5w7c:C 420 417 0.8204 0.8048 0.8106 0.0 5w78:B, 5w7c:D
3 5w7d:A 528 417 0.8034 0.6269 0.7938 0.0 5w7e:A, 5w7e:B, 5w7f:A, 5w7f:B
4 4wzo:71 93 59 0.0437 0.1935 0.3051 0.98
5 4bc2:A 528 81 0.0485 0.0379 0.2469 1.0 4bc2:B, 4bc2:C, 4bc4:A, 4bc4:B, 4bc4:C, 4bc5:A, 4bc5:B, 4bc5:C
6 6l7o:A 371 51 0.0437 0.0485 0.3529 1.2 6l7p:A
7 3gri:B 423 30 0.0316 0.0307 0.4333 2.8 3gri:A
8 8xqw:D 1539 80 0.0437 0.0117 0.2250 2.9
9 6j0z:C 488 35 0.0340 0.0287 0.4000 4.0
10 6uw0:B 295 19 0.0291 0.0407 0.6316 5.0 6uw0:A, 6uwk:A
11 6otw:B 152 31 0.0316 0.0855 0.4194 5.2 6otx:B, 6oty:B, 3pt7:B, 3pt8:B
12 7cdl:C 573 48 0.0364 0.0262 0.3125 6.0 7cdl:D, 7cdl:A, 7cdl:B, 7cdl:G, 7cdl:H, 7cdl:M, 7cdl:N, 7ce5:A, 7ce5:B, 7ce5:C, 7ce5:D, 7ce5:G, 7ce5:H, 7ce5:M, 7ce5:N, 7ce9:A, 7ce9:B, 7ce9:C, 7ce9:D, 7ce9:G, 7ce9:H, 7ce9:M, 7ce9:N, 7cfx:C, 7cfx:D, 7cfx:A, 7cfx:B, 7cfx:G, 7cfx:H, 7cfx:M, 7cfx:N, 4tqo:B, 4tqo:A, 4tqo:C, 4tqo:D, 4tqo:E, 4tqo:F, 4tqo:G, 4tqo:H
13 6brt:A 285 80 0.0510 0.0737 0.2625 7.2 6ap8:A, 6ap8:B, 5dj5:A, 4iha:A, 4iha:B, 3wio:A, 5yz7:A, 5yz7:B, 5zhr:A, 5zhr:B, 5zhs:A, 5zht:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218