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BioLiP
>protein
CAEFRIKYVGAIEKLEGPLDLINYIDVAQQDGKLFVPPEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGL
GAGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVL

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jif:A 130 130 0.9921 0.9692 0.9692 7.95e-88 4dx9:m, 4dx9:1, 4dx9:C, 4dx9:G, 4dx9:E, 4dx9:I, 4dx9:4, 4dx9:K, 4dx9:5, 4dx9:M, 4dx9:c, 4dx9:e, 4dx9:g, 4dx9:Q, 4dx9:S, 4dx9:W, 4dx9:Y
2 4dx9:0 110 128 0.8504 0.9818 0.8438 4.21e-66 4dx9:k, 4dx9:3, 4dx9:A, 4dx9:s, 4dx9:u, 4dx9:i, 4dx9:U
3 4dx9:O 102 128 0.7717 0.9608 0.7656 1.09e-56 4dx9:a
4 4dx9:2 91 127 0.7087 0.9890 0.7087 9.99e-49
5 4dx9:y 93 127 0.7087 0.9677 0.7087 1.82e-48
6 4dx9:o 63 121 0.4488 0.9048 0.4711 6.53e-15
7 3lqv:B 115 87 0.1496 0.1652 0.2184 7.2 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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