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BioLiP
>protein
AYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLAGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKA
ERSEVYSEAVKRIL

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4v7j:Ay 94 94 1.0000 1.0000 1.0000 2.40e-63 4v7j:By, 4v7k:Ay, 4v7k:By
2 1yge:A 839 66 0.1809 0.0203 0.2576 0.26 3bnb:A, 3bnc:A, 3bnd:A, 3bne:A, 5eeo:A, 1f8n:A, 1fgm:A, 1fgo:A, 1fgq:A, 1fgr:A, 1fgt:A, 3pzw:A, 2sbl:B, 2sbl:A, 7soi:A, 7soi:B, 7soj:A, 7soj:B, 5t5v:A, 5t5v:B, 5tqn:A, 5tqn:B, 5tqo:A, 5tqo:B, 5tqp:A, 5tqp:B, 5tr0:A, 5tr0:B, 4wfo:A, 4wha:A, 1y4k:A
3 8b6f:A8 217 40 0.1596 0.0691 0.3750 0.39 8bqs:A8
4 4jz6:A 484 28 0.1170 0.0227 0.3929 1.0
5 6x7l:A 303 31 0.1277 0.0396 0.3871 1.1 4hzo:A, 4hzp:A, 6x7m:A, 6x7n:A, 6x7o:A, 6x7p:A
6 6zej:I 351 40 0.1383 0.0370 0.3250 1.2 6alz:A, 6alz:B, 2bcd:A, 2bdx:A, 6czo:A, 6czo:C, 6dno:A, 8dwk:A, 8dwk:B, 8dwl:C, 8dwl:A, 3e7a:A, 3e7a:B, 3e7b:A, 3e7b:B, 3egg:A, 3egg:B, 3egh:A, 3egh:B, 1fjm:A, 1fjm:B, 6g0i:A, 6g0j:A, 4g9j:A, 4g9j:B, 6ghm:A, 6ghm:B, 3hvq:A, 3hvq:B, 1it6:A, 1it6:B, 1jk7:A, 4mov:A, 4mov:B, 4moy:A, 4mp0:C, 4mp0:A, 3n5u:A, 3n5u:B, 7nzm:B, 2o8g:A, 2o8g:B, 6obn:A, 6obn:B, 6obp:A, 6obq:A, 6obq:B, 6obr:A, 6obr:B, 6obs:A, 6obs:B, 6obu:A, 6obu:B, 7qfb:A, 7sd0:C, 8sw5:A, 8sw5:B, 8sw6:A, 8sw6:B, 7t0y:A, 7t0y:C, 7tvf:F, 7tvf:C, 7txh:C, 7txh:F, 1u32:A, 8u5g:A, 7upi:B, 4ut2:A, 4ut2:B, 4ut3:A, 4ut3:B, 4v0u:D, 4v0u:F, 4v0u:H, 4v0u:J, 4v0u:N, 4v0v:A, 4v0v:C, 4v0w:A, 4v0w:C, 4v0x:A, 3v4y:A, 3v4y:C, 3v4y:E, 3v4y:G, 4xpn:A, 4xpn:C, 6zee:P, 6zee:Q, 6zee:B, 6zee:A, 6zee:I, 6zee:K, 6zef:A, 6zef:B, 6zeg:A, 6zeg:B, 6zeh:A, 6zeh:B, 6zei:A, 6zei:B, 6zej:D, 6zej:A, 6zej:F, 6zej:L, 6zej:O, 6zk6:A, 5zqv:A, 5zqv:B, 5zqv:D, 5zqv:C, 5zt0:A, 5zt0:C, 5zt0:B, 5zt0:D, 5zt0:E, 5zt0:F
7 8a0x:D 110 72 0.1809 0.1545 0.2361 1.2 5ja8:C
8 4ej0:A 330 55 0.1702 0.0485 0.2909 2.7 4ej0:B, 4ej0:C, 4ej0:D, 4ej0:E, 4ej0:F, 4ej0:G, 4ej0:H, 4ej0:I, 4ej0:J
9 7p7q:R 118 37 0.1170 0.0932 0.2973 5.8 7nhk:R, 6o8w:P, 6o8x:P, 6o8y:P, 6o8z:P, 6o90:P, 7p7r:R, 7p7s:R, 7p7t:R, 7p7u:R, 6w6p:P, 6wu9:P
10 2grj:A 179 36 0.1596 0.0838 0.4167 5.9 2grj:B, 2grj:C, 2grj:D, 2grj:E, 2grj:F, 2grj:G, 2grj:H
11 8a3y:L 47 22 0.0957 0.1915 0.4091 6.0 7a6h:L, 7ae3:L, 7aea:L, 7b0y:L, 8b3d:L, 8b3f:L, 7b7u:L, 8bvw:L, 8byq:L, 8bz1:L, 7d58:L, 7d59:L, 7dn3:L, 7du2:L, 7edx:z, 7eg7:z, 7eg8:z, 7eg9:z, 7ega:z, 7egb:z, 7egc:z, 7ena:PL, 7enc:PL, 6exv:L, 7f4g:L, 7fji:L, 7fjj:L, 5flm:L, 6gmh:L, 6gml:L, 8gxq:PL, 8gxs:PL, 8ity:L, 8iue:L, 8iuh:L, 5iy6:L, 5iy7:L, 5iy8:L, 5iy9:L, 5iya:L, 5iyb:L, 5iyc:L, 7lbm:L, 7nvr:L, 7nvs:L, 7nvt:L, 7nvu:L, 7nvy:L, 7nvz:L, 7nw0:L, 6o9l:L, 7ob9:L, 7oba:L, 7obb:L, 8oeu:L, 8oev:L, 8oew:L, 8of0:L, 5oik:L, 7okx:L, 7oky:L, 7ol0:L, 7oo3:L, 7oob:L, 7oop:L, 7opc:L, 7opd:L, 7ozn:L, 7ozn:X, 7ozo:L, 7ozo:X, 7ozp:L, 7ozp:X, 8p4a:L, 8p4b:L, 8p4e:L, 8p4f:L, 7pks:L, 8rbx:L, 8s51:L, 8s52:L, 8s5n:L, 6ted:L, 8uha:L, 8uhd:L, 8uhg:L, 8ui0:L, 8uis:L, 7vba:L, 7vbb:L, 7vbc:L, 8w8e:L, 8w8f:L, 8wak:z, 8wal:z, 8wan:z, 8wao:z, 8wap:z, 8waq:z, 8war:z, 8was:z, 8wat:z, 8wau:z, 8wav:z, 8waw:z, 8wax:z, 8way:z, 8waz:z, 8wb0:z, 6xre:L, 7ycx:a, 7zwd:L, 7zx7:L, 7zx8:L
12 8a3w:SE 260 41 0.1489 0.0538 0.3415 6.2 8a98:SE, 6az1:E, 8ovj:SE, 8rxh:SE, 8rxx:SE, 5t2a:1
13 6fs7:A 182 45 0.1277 0.0659 0.2667 8.8 4awg:D, 4awk:A, 8ctf:A, 8dal:A, 6dcy:A, 8ddb:A, 8dde:A, 8dhn:A, 8djv:A, 8djy:A, 6dzq:A, 6e0q:A, 6e3m:A, 6e3n:A, 6e3o:A, 6e3p:A, 6e4c:A, 6e6v:A, 6e6w:A, 6e6x:A, 3ebj:A, 3ebj:B, 3ebj:C, 5fdd:A, 5fdg:A, 6fs6:A, 6fs6:B, 6fs6:C, 6fs6:D, 6fs6:E, 6fs6:F, 6fs7:B, 6fs7:C, 6fs7:D, 6fs7:E, 6fs7:F, 3hw3:A, 3hw3:B, 3hw3:C, 3hw3:D, 3hw4:A, 3hw4:B, 3hw4:C, 3hw4:D, 3hw5:A, 3hw5:B, 3hw5:C, 3hw5:D, 3hw6:A, 3hw6:B, 3hw6:C, 3hw6:D, 5i13:A, 5jht:A, 5jhv:A, 5jhv:B, 8t5v:A, 8t5w:A, 8t5z:A, 8t67:A, 8t6z:A, 8t81:A, 8t94:A, 7v04:A, 6v6x:A, 6v9e:A, 8vgz:A, 5w3i:A, 5w7u:A, 5w92:A, 5w9g:A, 5wa6:A, 5wdc:A, 7xgc:A, 4yyl:A, 4zhz:A, 4zi0:A, 4zqq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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