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BioLiP
>protein
AWDEWSPWSLCSSTCGRGFRDRTRTCRCEGPEKQTKFCNIALCP

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7r84:A 52 52 1.0000 0.8462 0.8462 1.79e-24 7r84:C, 7r84:D
2 7r84:B 45 45 0.9545 0.9333 0.9333 1.47e-23 7r85:A, 7r86:C
3 7r86:D 40 43 0.9091 1.0000 0.9302 2.42e-22
4 5foe:B 435 48 0.4773 0.0483 0.4375 6.47e-07 5foe:A
5 7yyk:A 114 54 0.5227 0.2018 0.4259 8.25e-07 1lsl:A
6 7yyk:A 114 54 0.4545 0.1754 0.3704 5.59e-06 1lsl:A
7 6ool:A 244 37 0.4091 0.0738 0.4865 8.06e-06
8 7za1:E 251 38 0.3636 0.0637 0.4211 5.14e-05 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
9 4hqo:A 257 20 0.2727 0.0467 0.6000 4.60e-04 4hql:A, 4hql:B, 4hqn:A, 4hqn:B
10 8ckk:B 121 47 0.3864 0.1405 0.3617 8.29e-04 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
11 6rus:A 234 32 0.3182 0.0598 0.4375 0.004 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
12 6rus:A 234 38 0.3409 0.0641 0.3947 0.034 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
13 6rus:A 234 25 0.2727 0.0513 0.4800 0.72 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
14 6qig:A 581 52 0.4091 0.0310 0.3462 0.007 3ghm:A, 3ghn:A, 3vn4:A
15 6rus:B 220 38 0.3409 0.0682 0.3947 0.018 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
16 6rus:B 220 27 0.2955 0.0591 0.4815 0.80 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
17 3t5o:A 871 37 0.3409 0.0172 0.4054 2.0
18 3t5o:A 871 20 0.2045 0.0103 0.4500 5.9
19 4e0s:B 898 37 0.3409 0.0167 0.4054 2.0 7nyc:B, 7nyd:B
20 4e0s:B 898 20 0.2045 0.0100 0.4500 5.6 7nyc:B, 7nyd:B
21 4a5w:B 871 37 0.3409 0.0172 0.4054 2.0
22 4a5w:B 871 20 0.2045 0.0103 0.4500 5.6
23 6brh:B 502 18 0.1818 0.0159 0.4444 3.4 6brg:A, 6brg:B, 6brg:C, 6brg:D, 6brh:A, 6brk:A
24 5epi:B 756 28 0.2500 0.0146 0.3929 3.7 8bdr:B, 8be0:B, 8bf5:B, 5epi:F, 5epi:J, 5epi:N, 5epi:R, 5epi:V, 6f5o:B, 5fmz:E, 5m3j:B, 5msg:B, 6qcs:B, 6qct:B, 6qcv:B, 6qcw:B, 6qcx:B, 7r1f:B, 8rn1:B, 8rn4:B, 8rn5:B, 8rn7:B, 8rn8:E, 8rn9:B, 8rnc:B, 6t0w:B, 4wrt:B, 4wsa:B, 7z42:E, 7z42:B, 7z43:BBB
25 6qwl:K 539 28 0.2500 0.0204 0.3929 4.0
26 5fmz:B 708 28 0.2500 0.0155 0.3929 4.2 8rn8:B
27 5lzb:z 614 12 0.1818 0.0130 0.6667 4.6 5lzc:z, 5lzd:z, 2pjp:A
28 7pgn:B 438 35 0.2955 0.0297 0.3714 8.4 7pgm:B, 7pgn:A, 2wfx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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