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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AWCWASYLEEEKAVAVPAKLFKEHQSFPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVN
ADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFENSGFRVGMKLEAVDKKNPSFICVATVTDMV
DNRFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVHFSWDKYLEETNSLPAPARAFKVKPPHGFQKK
MKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPL

The query sequence (length=306) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ut1:A 313 313 0.9902 0.9681 0.9681 0.0 4fl6:A, 4fl6:B, 4l59:A
2 2rhu:A 325 314 0.6732 0.6338 0.6561 8.64e-162 6byb:A, 3oq5:A, 3oq5:C, 3p8h:A, 3p8h:B, 2pqw:A, 2rhi:A, 2rhx:A, 2rhy:A, 2rje:A, 2rje:B, 2rjf:A, 2rjf:C, 3uwn:A
3 2rhu:A 325 205 0.2941 0.2769 0.4390 1.46e-51 6byb:A, 3oq5:A, 3oq5:C, 3p8h:A, 3p8h:B, 2pqw:A, 2rhi:A, 2rhx:A, 2rhy:A, 2rje:A, 2rje:B, 2rjf:A, 2rjf:C, 3uwn:A
4 2rhu:A 325 103 0.1699 0.1600 0.5049 1.54e-24 6byb:A, 3oq5:A, 3oq5:C, 3p8h:A, 3p8h:B, 2pqw:A, 2rhi:A, 2rhx:A, 2rhy:A, 2rje:A, 2rje:B, 2rjf:A, 2rjf:C, 3uwn:A
5 4c5i:A 423 278 0.3595 0.2600 0.3957 1.95e-52
6 4c5i:A 423 329 0.2908 0.2104 0.2705 4.81e-26
7 4c5i:A 423 99 0.1373 0.0993 0.4242 1.09e-20
8 4c5i:A 423 212 0.1961 0.1418 0.2830 3.39e-16
9 2vyt:A 214 210 0.2778 0.3972 0.4048 9.47e-51 4edu:A
10 2vyt:A 214 211 0.2810 0.4019 0.4076 8.57e-47 4edu:A
11 2vyt:A 214 100 0.1438 0.2056 0.4400 1.37e-20 4edu:A
12 3f70:A 392 276 0.3399 0.2653 0.3768 3.03e-50
13 3f70:A 392 317 0.3039 0.2372 0.2934 2.66e-29
14 3f70:A 392 99 0.1503 0.1173 0.4646 4.39e-21
15 3f70:A 392 206 0.1928 0.1505 0.2864 1.24e-19
16 3f70:A 392 103 0.1046 0.0816 0.3107 6.91e-10
17 3f70:B 410 276 0.3627 0.2707 0.4022 4.29e-50
18 3f70:B 410 186 0.2680 0.2000 0.4409 4.74e-37
19 3f70:B 410 320 0.3007 0.2244 0.2875 1.40e-31
20 3f70:B 410 211 0.2026 0.1512 0.2938 1.38e-21
21 3f70:B 410 99 0.1503 0.1122 0.4646 5.09e-21
22 3f70:B 410 105 0.1111 0.0829 0.3238 9.71e-10
23 3h6z:A 431 294 0.3333 0.2367 0.3469 3.58e-49 4c5h:A, 3h6z:B
24 3h6z:A 431 332 0.3268 0.2320 0.3012 8.44e-32 4c5h:A, 3h6z:B
25 3h6z:A 431 199 0.2386 0.1694 0.3668 2.97e-29 4c5h:A, 3h6z:B
26 3h6z:A 431 102 0.1471 0.1044 0.4412 1.13e-18 4c5h:A, 3h6z:B
27 2r58:A 212 214 0.2908 0.4198 0.4159 3.15e-48 2r5a:A, 2r5m:A
28 2r58:A 212 208 0.2582 0.3726 0.3798 2.08e-40 2r5a:A, 2r5m:A
29 2r58:A 212 100 0.1438 0.2075 0.4400 6.15e-19 2r5a:A, 2r5m:A
30 2vyt:B 183 201 0.2582 0.4317 0.3930 2.79e-40
31 2vyt:B 183 208 0.2484 0.4153 0.3654 1.66e-36
32 6l1p:C 70 56 0.0556 0.2429 0.3036 0.006 6l1f:B, 6l1p:B, 6l1p:A, 6l1p:D
33 6l1p:C 70 61 0.0556 0.2429 0.2787 0.084 6l1f:B, 6l1p:B, 6l1p:A, 6l1p:D
34 1d8c:A 709 49 0.0523 0.0226 0.3265 2.4 1p7t:A, 1p7t:B
35 6qud:A 837 35 0.0392 0.0143 0.3429 4.1
36 3brn:A 153 114 0.0817 0.1634 0.2193 7.8 3brn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218