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BioLiP
>protein
AVSTRLEAEALTASSGVIKSNADASGGQYRIFNAYGVAEQIDYAVPVSHAGAYDLVLGTMRFSDNGTYQLQIDGNDVGAP
VDLFRPSGKVVVVDLGSVTLSAGVHEFTFTAVGKNTSSLGYKLPLDYIQLVSA

The query sequence (length=133) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ehg:E 136 133 1.0000 0.9779 1.0000 5.10e-94 7ehg:A, 7ehg:B, 7ehg:C, 7ehg:D, 7ehg:F, 7ehg:G, 7ehg:H
2 6f2p:A 1040 132 0.3609 0.0462 0.3636 1.27e-16
3 7mq8:SP 1993 57 0.1504 0.0100 0.3509 0.17 7mq9:SP
4 7mqa:SP 2485 57 0.1504 0.0080 0.3509 0.17
5 2cdo:A 138 99 0.1955 0.1884 0.2626 0.57 2cdo:D, 2cdo:C, 2cdo:B, 2cdp:A, 2cdp:D, 2cdp:B, 2cdp:C
6 5mr0:D 290 102 0.1729 0.0793 0.2255 0.68 5mr0:A, 5mr0:B, 5mr0:C, 5mr0:E, 5mr0:F
7 7mdh:B 360 45 0.1128 0.0417 0.3333 1.7 7mdh:A, 7mdh:C, 7mdh:D
8 5kvp:A 159 49 0.1353 0.1132 0.3673 3.2
9 8kdb:A 2117 32 0.1053 0.0066 0.4375 3.6 8kdc:A
10 4im7:A 483 29 0.0827 0.0228 0.3793 7.5
11 7p43:B 690 35 0.0977 0.0188 0.3714 9.1 7p43:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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