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BioLiP
>protein
AVPATLSWSPKVAGVMIACNILAIAFGKLTIKQQNVGTPMPSSNFFGGFGLGAVLGTASFGHILGAGVILGLANMGV

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8asp:k 77 77 1.0000 1.0000 1.0000 4.16e-49 8am5:k, 8asl:k, 6nwa:K, 6nwa:k, 6nwa:T, 7umh:K, 7umh:T, 7umh:k
2 6kif:K 78 76 0.7013 0.6923 0.7105 1.64e-30 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
3 6vpv:K 78 76 0.5844 0.5769 0.5921 6.40e-25 6vpv:k, 6vpv:9
4 6k61:k 78 71 0.4805 0.4744 0.5211 1.65e-21 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
5 7y7b:K 78 76 0.4156 0.4103 0.4211 3.91e-15 7y8a:K
6 7fix:K1 79 72 0.4156 0.4051 0.4444 6.78e-14 7fix:K2, 7fix:K3, 6tra:K, 6trc:K, 6trc:k, 6trc:9, 6trd:K, 6trd:k, 6trd:9
7 8wm6:K 69 76 0.4286 0.4783 0.4342 3.02e-13 8wmj:K, 8wmv:K, 8wmw:K
8 7s3d:K 75 76 0.5065 0.5200 0.5132 1.41e-12 7s3d:T, 7s3d:k
9 4l6v:K 80 79 0.4286 0.4125 0.4177 3.65e-12 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
10 6tcl:K 60 69 0.3896 0.5000 0.4348 2.96e-11 6tcl:KK
11 7y5e:KN 70 64 0.3506 0.3857 0.4219 4.96e-10 7y5e:K2, 7y7a:K7, 7y7a:Ko
12 8wey:K 63 63 0.3247 0.3968 0.3968 1.50e-09
13 7qco:K 65 57 0.3117 0.3692 0.4211 2.62e-07 7qco:R, 7qco:r, 7qco:k
14 6kmx:aK 46 56 0.3117 0.5217 0.4286 3.04e-07 6kmx:bK, 6kmx:cK
15 7m75:K 47 56 0.3117 0.5106 0.4286 1.32e-06 4fe1:K, 1jb0:K, 7m76:K, 7m78:K, 3pcq:K, 6pfy:K, 6pfy:T, 6pfy:g, 6pgk:T, 6pgk:K, 6pgk:g, 5zf0:K1, 5zf0:K2, 5zf0:K3, 5zf0:K4, 5zf0:K6, 5zf0:K5
16 4kt0:K 53 70 0.3377 0.4906 0.3714 3.24e-06
17 8bcv:K 88 60 0.3117 0.2727 0.4000 1.69e-04 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
18 5zgb:K 59 63 0.2338 0.3051 0.2857 2.59e-04 7blz:K, 6fos:K, 5zgh:K
19 8j6z:K 84 63 0.2857 0.2619 0.3492 0.006 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
20 7wfd:AK 65 29 0.1948 0.2308 0.5172 0.012 7wfe:BK, 7wg5:AK, 7wg5:BK
21 8wgh:K 83 64 0.2857 0.2651 0.3438 0.012
22 8j7a:K 56 28 0.1818 0.2500 0.5000 0.027
23 7a4p:K 86 34 0.2078 0.1860 0.4706 0.070 6zzx:K, 6zzy:K
24 4xk8:k 46 28 0.1818 0.3043 0.5000 0.38 4xk8:K
25 6igz:K 80 25 0.1688 0.1625 0.5200 1.1
26 7dr2:aK 69 58 0.2857 0.3188 0.3793 1.5 7dr0:K, 7dr2:cK
27 7dz7:K 86 34 0.1948 0.1744 0.4412 4.3 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
28 8htu:K 81 45 0.1818 0.1728 0.3111 4.6 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
29 4y28:K 57 22 0.1429 0.1930 0.5000 4.8
30 6e4v:A 672 28 0.1818 0.0208 0.5000 6.3
31 7ufr:A 1038 31 0.1299 0.0096 0.3226 8.5 7ufr:B, 7ufr:C, 7ufr:D, 7ufu:A, 7ufu:B, 7ufu:C, 7ufu:D
32 5wyj:CB 1098 28 0.1299 0.0091 0.3571 9.6 7ajt:UV, 7aju:UV, 7d4i:RE, 7d5s:RE, 7d5t:RE, 7d63:RE, 6ke6:RE, 6lqp:RE, 6lqq:RE, 6lqr:RE, 6lqs:RE, 6lqt:RE, 6lqu:RE, 7suk:NH, 5wyk:CB, 6zqb:UV, 6zqc:UV, 6zqd:UV, 6zqe:UV

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218