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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVFFEPHEENVLRCPERVLRRLLEDAAVTMRGGGWREDVLMDRVRKRYLRQELRDLGHRVQTYCE

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7etj:N 76 65 1.0000 0.8553 1.0000 1.00e-42 7et3:N, 7eto:N
2 7et3:O 69 65 0.8308 0.7826 0.8308 2.70e-30 7etj:O, 7eto:O
3 3rpl:B 349 23 0.1846 0.0344 0.5217 0.43 3roj:A, 3roj:B, 3roj:C, 3roj:D, 3rpl:A, 3rpl:C, 3rpl:D
4 5a5l:A 338 23 0.2000 0.0385 0.5652 0.86
5 7wbb:F 699 24 0.1692 0.0157 0.4583 1.2
6 7ykk:E 735 24 0.1692 0.0150 0.4583 1.2 7nku:A, 7nku:F, 7nku:B, 7nku:C, 7nku:D, 7nku:E, 7wbb:A, 7wbb:B, 7wbb:D, 7wbb:E, 7wbb:C, 7wd3:A, 7wd3:B, 7wd3:C, 7wd3:D, 7wd3:E, 7wd3:F, 7ykk:D, 7ykk:F, 7ykk:A, 7ykk:B, 7ykk:C, 7ykl:F, 7ykl:A, 7ykl:B, 7ykl:C, 7ykl:D, 7ykl:E, 7ykt:F, 7ykt:A, 7ykt:B, 7ykt:C, 7ykt:D, 7ykt:E, 7ykz:D, 7ykz:C, 7ykz:F, 7ykz:B, 7ykz:E, 7ykz:A, 7z11:A, 7z11:B, 7z11:C, 7z11:D, 7z11:F, 7z11:E, 7z34:w, 7z34:m, 7z34:n, 7z34:t, 7z34:Aa, 7z34:x
7 1r6v:A 671 20 0.1385 0.0134 0.4500 2.6
8 7b0n:G 694 34 0.2308 0.0216 0.4412 3.7 6gcs:A, 7o6y:A, 7o71:A, 6rfq:A, 6rfr:A, 6rfs:A, 6y79:A, 6yj4:G
9 7mq8:LJ 469 23 0.1538 0.0213 0.4348 3.9 7mq9:LJ, 7mqa:LJ
10 4jay:A 338 52 0.2462 0.0473 0.3077 3.9 4jay:B, 4jay:C, 4jay:D, 4jb1:A, 7or2:A, 7orz:A, 7osq:A
11 3muo:A 684 30 0.1692 0.0161 0.3667 4.0 3iuq:A, 3iur:A, 3ivm:A
12 8xvb:C 246 40 0.2462 0.0650 0.4000 5.9 8xvb:D, 8xvb:F, 8xvb:G, 8xvb:H, 8xvb:A, 8xvb:B, 8xvb:E, 8xvc:A, 8xvc:B, 8xvc:C, 8xvc:D, 8xvc:E, 8xvc:F, 8xvc:G, 8xvc:H, 8xvc:I, 8xvc:J, 8xvc:K, 8xvc:L, 8xvc:M, 8xvc:N, 8xvc:O, 8xvc:P, 8xvc:Q, 8xvc:R, 8xvd:A, 8xvd:B, 8xvd:C, 8xvd:D, 8xvd:E, 8xvd:F, 8xvd:G, 8xvd:H, 8xvd:I, 8xvd:J, 8xvd:K, 8xvd:L, 8xvd:M, 8xvd:N, 8xvd:O, 8xvd:P, 8xvd:Q, 8xvd:R, 8xvd:S, 8xvd:T
13 7q92:C 293 33 0.1692 0.0375 0.3333 8.1 7q92:A, 7q92:D, 7q93:C, 7q93:D, 7q94:A, 7q94:B
14 7q92:B 288 33 0.1692 0.0382 0.3333 8.1
15 8c9e:A 921 25 0.1385 0.0098 0.3600 9.2 8c9f:A, 8c9g:A, 8c9g:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218