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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATPSLRGRLARFANPGKPILKPNKPLILANRVGNRRREKGEATCITEMSMMMACWKQNEFRDEACRKEIQDFFDCSSRAQ
EARKMRSIQESLGQSESLSPHKMTKLLQRFPNKSHLI

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pnw:2 117 117 1.0000 1.0000 1.0000 8.57e-85
2 3jd5:m 118 116 0.8205 0.8136 0.8276 3.58e-68 5aj3:m, 5aj4:Am, 6gaw:Am, 6gaz:Am, 6neq:m, 6nf8:m, 7nqh:Am, 7nql:Am, 7nsi:Am, 7nsj:Am, 8oin:Ac, 8oip:Ac, 6ydp:Am, 6ydw:Am
3 8any:A2 117 116 0.8291 0.8291 0.8362 2.86e-64 7a5f:c6, 7a5g:c6, 7a5i:c6, 7a5k:c6, 3j9m:A2, 8k2a:Sm, 7l08:A2, 6nu2:A2, 6nu3:A2, 7og4:A2, 8oir:Ac, 8ois:Ac, 7p2e:2, 7po1:2, 7po2:2, 7po3:2, 7qi4:A2, 7qi5:A2, 7qi6:A2, 8qrm:2, 8qrn:2, 6rw4:2, 6rw5:2, 6vlz:A2, 6vmi:A2, 8xt0:Sm, 8xt2:Sm, 6zm5:A2, 6zm6:A2, 6zs9:A2, 6zsa:A2, 6zsb:A2, 6zsc:A2, 6zsd:A2, 6zse:A2, 6zsg:A2
4 6yw5:11 88 47 0.1368 0.1818 0.3404 0.16 6ywe:11, 6ywx:11, 6ywy:11
5 6z6b:PPP 2036 59 0.1624 0.0093 0.3220 0.25 6z6b:EEE
6 7orj:A 2129 47 0.1197 0.0066 0.2979 0.40
7 8om2:Z 92 77 0.1624 0.2065 0.2468 1.4 8d8k:Z, 8d8l:Z, 5mrc:ZZ, 5mre:ZZ, 5mrf:ZZ, 8om3:Z, 8om4:Z
8 6z6g:A 2142 58 0.1538 0.0084 0.3103 1.4 5amr:A
9 7orl:A 2183 43 0.1282 0.0069 0.3488 3.8 7oa4:AAA, 7oa4:BBB, 7oa4:DDD, 7oa4:GGG, 7ork:A, 7plr:AAA, 7plr:BBB, 7plr:DDD, 7plr:GGG, 2xi5:A, 2xi5:B, 2xi5:C, 2xi5:D, 2xi7:A, 2xi7:B, 2xi7:C, 2xi7:D
10 6z8k:A 2158 43 0.1282 0.0070 0.3488 4.0 5amq:A, 7orn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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