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BioLiP
>protein
ATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTG

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3occ:F 238 50 0.9400 0.1975 0.9400 2.28e-29 1a69:A, 1a69:B, 1a69:C, 5i3c:A, 5i3c:B, 5i3c:C, 5iu6:A, 5iu6:B, 5iu6:C, 1k9s:A, 1k9s:D, 1k9s:B, 1k9s:E, 1k9s:C, 1k9s:F, 3occ:A, 3occ:B, 3occ:C, 3occ:D, 3occ:E, 3ooe:A, 3ooe:B, 3ooe:C, 3ooe:D, 3ooe:E, 3ooe:F, 3opv:A, 3opv:B, 3opv:C, 3opv:D, 3opv:E, 3opv:F, 3opv:G, 3opv:H, 3opv:I, 3opv:J, 3opv:K, 3opv:L, 1oty:A, 1oty:B, 1oty:C, 1ou4:A, 1ou4:B, 1ou4:C, 1oum:A, 1oum:B, 1oum:C, 1ov6:A, 1ov6:B, 1ov6:C, 1ovg:A, 1ovg:B, 1ovg:C, 1pk7:A, 1pk7:B, 1pk7:C, 1pk9:A, 1pk9:B, 1pk9:C, 1pke:A, 1pke:B, 1pke:C, 1pr0:A, 1pr0:B, 1pr0:C, 1pr1:A, 1pr1:B, 1pr1:C, 1pr2:A, 1pr2:B, 1pr2:C, 1pr4:A, 1pr4:B, 1pr4:C, 1pr5:A, 1pr5:B, 1pr5:C, 1pr6:A, 1pr6:B, 1pr6:C, 1pw7:A, 1pw7:B, 1pw7:C, 4ts3:A, 4ts3:D, 4ts3:B, 4ts3:C, 4ts3:E, 4ts3:F, 4ts9:A, 4ts9:C, 4ts9:B, 4tta:A, 4tta:B, 4tta:C, 4tta:F, 4tta:D, 4tta:E, 4tti:A, 4tti:B, 4tti:C, 4tti:F, 4tti:D, 4tti:E, 4ttj:A, 4ttj:D, 4ttj:B, 3ut6:A, 3ut6:B, 3ut6:C, 6xz2:B, 6xz2:C
2 3of3:A 240 50 0.7800 0.1625 0.7800 2.92e-23 3of3:B, 3of3:C, 3of3:D, 3of3:E, 3of3:F, 3of3:G, 3of3:H, 3of3:I, 3of3:J, 3of3:K, 3of3:L, 1vhw:A, 1vhw:D, 1vhw:B, 1vhw:F, 1vhw:C, 1vhw:E
3 3uaw:A 233 47 0.6800 0.1459 0.7234 2.21e-19 2ac7:A, 2ac7:B, 3uav:A, 3uax:A, 3uay:A, 3uaz:A
4 2isc:D 238 50 0.6800 0.1429 0.6800 7.86e-19 2i4t:A, 2i4t:B, 2i4t:C, 2isc:A, 2isc:B, 2isc:C, 2isc:E, 2isc:F, 1z34:A, 1z35:A, 1z36:A, 1z37:A, 1z38:A, 1z39:A
5 6f4w:A 233 49 0.6200 0.1330 0.6327 4.07e-18 6f4w:D, 6f4w:B, 6f4w:E, 6f4w:C, 6f4w:F, 6f4x:A, 6f4x:D, 6f4x:B, 6f4x:E, 6f4x:C, 6f4x:F, 5lu0:A, 5lu0:B, 5lu0:C, 5lu0:E, 5mx4:C, 5mx6:A, 5mx6:B, 5mx6:C, 5mx6:D, 5mx6:F, 5mx8:A, 7ooy:B, 7ooz:B, 7op9:A, 7op9:B, 7op9:C, 7op9:D, 7op9:E, 7op9:F, 7op9:G, 7op9:H, 7op9:I, 7op9:J, 7op9:K, 7op9:L, 7opa:C, 7opa:H
6 4dae:A 232 47 0.6400 0.1379 0.6809 4.52e-17 4d8v:A, 4d8v:B, 4d9h:A, 4d9h:B, 4da0:A, 4da6:A, 4da7:A, 4da8:A, 4dab:A, 4dan:A, 4dan:B, 4dao:A, 4dao:B, 4dar:A
7 3u40:D 241 49 0.5200 0.1079 0.5306 3.01e-13 3u40:A, 3u40:B, 3u40:C, 3u40:E, 3u40:F
8 1odi:A 234 47 0.5000 0.1068 0.5319 6.13e-13 1odi:B, 1odi:C, 1odi:D, 1odi:E, 1odi:F, 1odj:A, 1odj:B, 1odj:C, 1odj:D, 1odj:E, 1odj:F, 1odl:A, 1odl:F, 1odl:B, 1odl:C, 1odl:D, 1odl:E
9 1jdv:C 235 47 0.4000 0.0851 0.4255 3.94e-05 1jds:A, 1jds:B, 1jds:C, 1jds:D, 1jds:E, 1jds:F, 1jdt:A, 1jdt:B, 1jdt:C, 1jdv:A, 1jdv:B, 1jdv:D, 1jdv:E, 1jdv:F, 1jdz:A, 1jdz:B, 1jdz:C, 1je0:A, 1je0:B, 1je0:C, 1je1:A, 1je1:B, 1je1:C, 1je1:D, 1je1:E, 1je1:F, 1jp7:A, 1jp7:B, 1jp7:C, 1jpv:A, 1jpv:B, 1jpv:C
10 3qpb:C 254 47 0.3800 0.0748 0.4043 7.57e-04 3qpb:A, 3qpb:B, 3qpb:D, 3qpb:E, 3qpb:F, 3qpb:G, 3qpb:H, 3qpb:I, 3qpb:J, 3qpb:K, 3qpb:L, 3qpb:M, 3qpb:N, 3qpb:O, 3qpb:P, 3qpb:Q, 3qpb:R
11 4r2w:D 251 42 0.3400 0.0677 0.4048 0.040 7q2w:FFF, 4r2w:A, 4r2w:B, 4r2w:C, 4r2w:E, 4r2w:F, 4r2x:C, 4r2x:D, 4r2x:E, 4r2x:F, 4r2x:A, 4r2x:B, 4yjk:D, 4yjk:F, 4yjk:A
12 5efo:B 253 39 0.3000 0.0593 0.3846 0.53 5c80:A, 5c80:B, 5c80:C, 5c80:D, 5c80:E, 5c80:F, 5efo:A, 5efo:C, 5efo:D, 5efo:E, 5efo:F, 5epu:A, 5epu:B, 5epu:C, 5epu:D, 5epu:E, 5epu:F, 4k6o:A, 4k6o:B, 4k6o:C, 4k6o:D, 4k6o:E, 4k6o:F, 5lhv:A, 5lhv:B, 5lhv:C, 5lhv:D, 5lhv:E, 5lhv:F, 5lok:A, 5lok:B, 5lok:C, 5lok:D, 5lok:E, 5lok:F, 5m2t:A, 5m2t:B, 5m2t:C, 5m2t:D, 5m2t:E, 5m2t:F, 5miw:A, 5miw:B, 5miw:C, 5miw:D, 5miw:E, 5miw:F, 4oeh:A, 4oeh:B, 4oeh:E, 4oeh:F, 4ogl:A, 4ogl:B, 4ogl:C, 4ogl:D, 4ogl:E, 4ogl:F, 3pns:B, 3pns:C, 3pns:D, 3pns:E, 3pns:F, 3pns:G, 3pns:H, 3pns:I, 3pns:J, 3pns:K, 3pns:L, 6rca:A, 6rca:B, 6rca:C, 6rca:D, 6rca:E, 6rca:F, 4u2k:B, 4u2k:D, 4u2k:F
13 3mb8:A 248 27 0.2200 0.0444 0.4074 0.75 3mb8:B
14 7z4m:A 497 29 0.2000 0.0201 0.3448 1.1 6ksh:A, 6ksh:B, 6ksh:C, 6ksh:D, 7z4n:A, 7z4r:A
15 8b9z:D 430 21 0.2200 0.0256 0.5238 1.4 8esz:S2
16 3wr9:A 416 38 0.2800 0.0337 0.3684 2.1 3wku:A, 3wku:B, 3wpm:A, 3wpm:B, 3wr3:A, 3wr3:B, 3wr4:A, 3wr4:B, 3wr8:A, 3wr8:B, 3wr9:B, 3wra:A, 3wra:B, 3wrb:A, 3wrb:B, 3wrc:A, 3wrc:B
17 8hmy:B 264 22 0.2200 0.0417 0.5000 2.8 8hmz:B, 8iss:C
18 1z6o:A 212 29 0.2400 0.0566 0.4138 2.8 1z6o:E, 1z6o:L, 1z6o:B, 1z6o:D, 1z6o:K, 1z6o:C, 1z6o:H, 1z6o:I, 1z6o:F, 1z6o:G, 1z6o:J
19 7uxa:A 230 22 0.2200 0.0478 0.5000 3.1
20 7zrz:AP1 184 22 0.2200 0.0598 0.5000 3.2
21 7o0u:C 301 29 0.2200 0.0365 0.3793 6.4 7o0v:C, 7o0w:C, 7o0x:C
22 8iav:C 460 24 0.2000 0.0217 0.4167 6.8 8iav:D
23 5z06:B 698 40 0.2800 0.0201 0.3500 6.9 5z06:A
24 8iau:H 412 24 0.2000 0.0243 0.4167 7.5
25 8iav:A 451 24 0.2000 0.0222 0.4167 7.9 8iav:B
26 3csl:A 753 33 0.2400 0.0159 0.3636 7.9 3csl:B, 3ddr:A, 3ddr:B
27 8iat:A 501 24 0.2000 0.0200 0.4167 8.2 8iat:B, 8iat:C, 8iat:D, 8iau:A, 8iau:B, 8iau:C, 8iau:D, 8iau:E, 8iau:F, 8iau:G, 8iaw:A, 8iaw:B, 8iax:A, 8iax:B, 8iax:C, 8iax:D, 8iax:E, 8iax:F, 8iax:G, 8iax:H, 8xw6:A, 8xw6:B, 8xw7:A, 8xw7:B, 8xw8:A, 8xw8:B, 8xw8:C, 8xw8:D, 8xw9:A, 8xw9:B, 8zly:A, 8zly:B, 8zly:C, 8zly:D, 8zly:E, 8zly:F, 8zly:G, 8zly:H
28 2cfm:A 561 18 0.1800 0.0160 0.5000 8.5
29 8iuf:S2 394 21 0.2000 0.0254 0.4762 8.5 8j9h:S2, 8j9i:S2, 8j9j:S2
30 3n0y:A 176 49 0.3600 0.1023 0.3673 9.3 3n0y:B, 3n0z:A, 3n0z:B, 3n10:A, 3n10:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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