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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATHKPINILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPT
AIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIG
RMEAIAADTGCSIVFLHHAVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADRWFRRHDGGVLK
PAVLERQRKSKGVP

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1nlf:B 254 254 1.0000 1.0000 1.0000 0.0
2 1j70:A 512 69 0.0709 0.0352 0.2609 0.43 1g8f:A, 1g8g:A, 1g8g:B, 1g8h:A, 1g8h:B, 1j70:B, 1j70:C, 1jec:A, 1jed:A, 1jed:B, 1jee:A, 1jee:B, 1r6x:A
3 5x7o:A 1247 43 0.0669 0.0136 0.3953 0.78 5x7o:B, 5x7p:B, 5x7p:A, 5x7q:A, 5x7q:B, 5x7r:A, 5x7r:B, 5x7s:A, 5x7s:B
4 1o7k:A 124 28 0.0551 0.1129 0.5000 0.88 1o7k:B, 1o7k:C
5 2ixf:A 255 90 0.1142 0.1137 0.3222 2.5 2ixe:A, 2ixe:D, 2ixf:B, 2ixf:C, 2ixf:D, 2ixg:A, 4k8o:A
6 1oq6:A 76 29 0.0512 0.1711 0.4483 2.9
7 7wiv:A 571 34 0.0669 0.0298 0.5000 3.0 7wiw:A, 7wix:A
8 2oap:2 503 97 0.0945 0.0477 0.2474 3.2 2oap:1, 2oaq:2
9 3t37:A 509 41 0.0669 0.0334 0.4146 6.0 4ha6:A
10 7n65:H 107 46 0.0472 0.1121 0.2609 6.2 7n65:L
11 8t4j:A 552 40 0.0787 0.0362 0.5000 6.8 1jj7:A, 8t4e:A, 8t4f:A, 8t4g:A, 8t4h:A, 8t4i:A
12 6bhu:A 1328 102 0.1142 0.0218 0.2843 7.1 5uja:A, 6uy0:A
13 8f4b:A 1182 102 0.1142 0.0245 0.2843 7.1
14 8t4e:B 551 35 0.0709 0.0327 0.5143 8.2 8t4f:B, 8t4g:B, 8t4h:B, 8t4i:B, 8t4j:B
15 8cs9:Q 390 58 0.0748 0.0487 0.3276 9.8 8cs9:L, 8csx:L, 8csx:Q, 8cte:L, 8cte:Q, 7uzq:L, 7uzq:Q, 7v0k:L, 7v0k:Q, 7v0s:L, 7v0s:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218