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BioLiP
>protein
ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRF
GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT
TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4bal:A 207 206 0.9951 0.9903 0.9951 8.34e-152 4bar:A, 6c6w:A, 6e0d:A, 3e3s:A, 5jvx:A, 5l4r:A, 2pe7:A, 5sw1:A, 5t3g:A, 4tvt:A
2 4bps:A 331 40 0.0777 0.0483 0.4000 0.58
3 6zn1:AAA 400 112 0.1359 0.0700 0.2500 1.3 6zjh:AAA, 6zmz:AAA
4 2ynm:D 488 81 0.1019 0.0430 0.2593 2.4
5 7yp9:D 1285 52 0.0825 0.0132 0.3269 3.8
6 6dii:H 616 100 0.1311 0.0438 0.2700 3.8 6dii:A, 6dii:B, 6dii:C, 6dii:D, 6dii:E, 6dii:F, 6dii:G, 6dii:I, 6dii:J, 6dii:K, 6dii:L, 8ey1:D, 8ey1:F, 8ey1:H, 8ey1:J, 8ey1:L, 8ey9:B, 8ey9:E, 8ey9:F, 8ey9:G, 8ey9:H, 8ey9:I
7 5x45:B 137 18 0.0534 0.0803 0.6111 5.7 5x45:A, 5x45:C, 5x45:D
8 7ara:A 139 18 0.0534 0.0791 0.6111 7.4 7ara:B, 2hrv:A, 2hrv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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