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BioLiP
>protein
ASVQIKMGTDKYAPLYEPKALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTKLAIAPGSFYSVTLGTPGTYSF
YCTPHRGAGMVGTITVE

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1b3i:A 97 97 1.0000 1.0000 1.0000 4.50e-68 2b3i:A, 2jxm:A
2 1bxu:A 91 96 0.4845 0.5165 0.4896 3.75e-29 1bxv:A
3 1j5c:A 98 99 0.4742 0.4694 0.4646 2.35e-27 1j5d:A, 1jxd:A, 1jxf:A, 1pcs:A
4 2gim:A 106 99 0.5155 0.4717 0.5051 5.75e-26 2cj3:A, 2cj3:B, 1fa4:A, 2gim:C, 1nin:A, 1tu2:A
5 4r0o:A 106 100 0.4845 0.4434 0.4700 6.07e-26 1baw:A, 1baw:B, 1baw:C, 3bqv:A, 3cvb:A, 3cvb:B, 3cvc:A, 3cvd:A, 3cvd:B, 3cvd:C, 2q5b:A, 2q5b:B, 2q5b:C, 4r0o:B, 4r0o:C, 4r0o:D, 2w88:A, 2w88:B, 2w88:C, 2w8c:A, 2w8c:B
6 2plt:A 98 95 0.4639 0.4592 0.4737 1.48e-25 7zqe:M
7 6yez:P 99 98 0.4639 0.4545 0.4592 2.65e-23 6zoo:P
8 1pla:A 97 95 0.4021 0.4021 0.4105 3.80e-22 1plb:A
9 9pcy:A 99 98 0.4433 0.4343 0.4388 4.58e-22
10 1ag6:A 99 98 0.4330 0.4242 0.4286 8.43e-22 1oow:A, 2pcf:A, 1tef:A, 1tef:B, 1teg:A, 1teg:B, 1ylb:B
11 7pcy:A 98 95 0.4124 0.4082 0.4211 1.43e-20
12 1iuz:A 98 95 0.4227 0.4184 0.4316 1.80e-20
13 1byo:A 99 97 0.4433 0.4343 0.4433 6.07e-20 1byo:B, 1byp:A
14 1jxg:A 100 98 0.3918 0.3800 0.3878 1.81e-18 4dp7:X, 4dp8:X, 4dp9:X, 4dpa:X, 4dpb:X, 4dpc:X, 1jxg:B, 3pcy:A, 4pcy:A, 5pcy:A, 6pcy:A, 1plc:A, 1pnc:A, 1pnd:A, 1tkw:A
15 4dp0:X 99 98 0.4021 0.3939 0.3980 2.12e-18 4dp1:X, 4dp2:X, 4dp4:X, 4dp5:X, 4dp6:X
16 2bz7:A 102 90 0.3505 0.3333 0.3778 1.23e-16 2bzc:A, 1kdi:A, 1kdj:A
17 6akn:A 124 86 0.3505 0.2742 0.3953 1.58e-09 6akn:B, 1bqk:A, 1bqr:A, 8hm9:A, 8hm9:B, 6ifp:A, 6ifp:C, 2jkw:A, 2jkw:B, 2ux6:A, 2ux7:A, 2uxf:A, 2uxg:A, 5wv4:A, 5wv4:B, 5xmo:A, 5y23:A, 5y23:B, 4yl4:A, 5ysg:A, 5ysg:B, 5ysg:C, 5ysg:D, 5yw3:A, 5yw3:B, 5yw3:C, 5yw3:D, 5z0x:A, 5z0x:B, 1zia:A, 1zib:A, 5ztd:A, 5ztd:B
18 3c75:A 106 77 0.2887 0.2642 0.3636 1.89e-08 3c75:B, 1id2:A, 1id2:B, 1id2:C
19 1aac:A 105 85 0.3093 0.2857 0.3529 4.06e-08 1aan:A, 1bxa:A, 2gb2:A, 2gba:A, 2gc4:C, 2gc4:G, 2gc4:K, 2gc4:O, 2idq:A, 2ids:A, 2idt:A, 2idu:A, 3ie9:A, 3iea:A, 2j55:A, 2j55:B, 2j56:A, 2j56:B, 2j57:A, 2j57:B, 2j57:C, 2j57:D, 3l45:A, 1mda:A, 1mda:B, 1mg2:C, 1mg2:G, 1mg2:K, 1mg2:O, 1mg3:C, 1mg3:G, 1mg3:K, 1mg3:O, 2mta:A, 2ov0:A, 4p5r:A, 4p5s:A, 3ply:A, 3ply:B, 3ply:C, 3ply:D, 2qdv:A, 2qdw:A, 2rac:A, 3rym:A, 3rym:C, 3rym:B, 3rym:D, 1sf3:A, 1sf5:A, 1sfd:A, 1sfd:B, 1sfh:A, 1sfh:B, 1t5k:A, 1t5k:B, 1t5k:C, 1t5k:D
20 3tu6:A 127 81 0.3093 0.2362 0.3704 5.46e-08
21 8k9n:A 125 86 0.3093 0.2400 0.3488 8.80e-07 8k9p:A, 3nyk:A, 2p80:D, 1paz:A, 3paz:A, 4paz:A, 5paz:A, 6paz:A, 7paz:A, 8paz:A, 1py0:A, 1pza:A, 1pzb:A, 4rh4:A, 5x31:A, 5x31:B
22 1adw:A 123 87 0.3196 0.2520 0.3563 4.46e-06 1adw:B, 4bwt:A, 4bwt:B, 4bwu:A, 4bwu:B, 4bxv:A, 4bxv:B, 3erx:A, 3erx:B
23 1pmy:A 123 82 0.2474 0.1951 0.2927 0.002
24 5b1j:C 124 85 0.2577 0.2016 0.2941 0.004 3ef4:A, 3ef4:B, 3ef4:C
25 6hbe:C 427 81 0.2577 0.0585 0.3086 0.018 6hbe:A, 6hbe:B
26 6hbe:C 427 91 0.2680 0.0609 0.2857 1.7 6hbe:A, 6hbe:B
27 6kol:A 125 125 0.3299 0.2560 0.2560 0.055 6l9s:A
28 5fc9:A 95 84 0.2371 0.2421 0.2738 0.12 5fc9:B, 5fc9:C, 5fc9:D
29 1aoz:A 552 63 0.1856 0.0326 0.2857 0.30 1aoz:B, 1aso:A, 1aso:B, 1asp:A, 1asp:B, 1asq:A, 1asq:B
30 6vox:A 407 46 0.1443 0.0344 0.3043 0.58
31 6vow:A 409 46 0.1340 0.0318 0.2826 1.9
32 6the:A 299 84 0.2577 0.0836 0.2976 2.4
33 3kvn:X 628 47 0.1856 0.0287 0.3830 2.5 3kvn:A
34 8jze:a 670 27 0.1237 0.0179 0.4444 4.2 8jzf:a
35 2hyd:A 578 38 0.1340 0.0225 0.3421 4.8 2hyd:B, 2onj:A, 2onj:B
36 5kd2:A 591 24 0.1031 0.0169 0.4167 5.8 5kd5:A, 5kd8:A
37 7n3z:A 379 56 0.1649 0.0422 0.2857 6.0 7n3y:B, 7n3y:C, 7n3y:A, 7n3y:D
38 4v5i:AS 298 39 0.1443 0.0470 0.3590 7.5 4v5i:AT, 4v5i:AU, 4v5i:AV, 4v5i:AW, 4v5i:AX, 4v5i:BS, 4v5i:BT, 4v5i:BU, 4v5i:BV, 4v5i:BW, 4v5i:BX
39 7dr0:A 739 19 0.1031 0.0135 0.5263 9.0 7dr1:A, 7dr2:aA, 7dr2:bA, 7dr2:cA, 7dr2:dA
40 1iby:A 112 88 0.2165 0.1875 0.2386 9.8 1iby:B, 1iby:C, 1iby:D, 1ibz:A, 1ibz:B, 1ibz:C, 1ibz:D, 1ic0:A, 1ic0:B, 1ic0:C, 1ic0:D, 1ic0:E, 1ic0:F
41 2vg8:A 465 44 0.1753 0.0366 0.3864 9.9 2vce:A, 2vch:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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