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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASIAVEAENFNAVGGPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVT
AVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN

The query sequence (length=128) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2cdo:A 138 136 0.9844 0.9130 0.9265 5.95e-86 2cdo:D, 2cdo:C, 2cdo:B, 2cdp:A, 2cdp:D, 2cdp:B, 2cdp:C
2 1uyy:A 131 124 0.2812 0.2748 0.2903 8.55e-04 1uy0:A, 1uy0:B, 1uyx:A, 1uyx:B, 1uyy:B, 1uyz:A, 1uyz:B, 1uz0:A
3 5fui:A 124 129 0.2969 0.3065 0.2946 0.001
4 2v4v:A 129 126 0.2422 0.2403 0.2460 0.11
5 1w9t:A 134 90 0.2109 0.2015 0.3000 0.28 1w9t:B, 1w9w:A
6 8v8m:A 389 45 0.1094 0.0360 0.3111 0.29 8v8m:C
7 7ehg:E 136 99 0.2031 0.1912 0.2626 0.56 7ehg:A, 7ehg:B, 7ehg:C, 7ehg:D, 7ehg:F, 7ehg:G, 7ehg:H
8 6tu9:A 267 47 0.1016 0.0487 0.2766 0.59 6tu9:B
9 6m61:O 336 87 0.1797 0.0685 0.2644 0.66 6ade:A, 5ddi:P, 5ddi:R, 5ddi:S, 6iq6:A, 6iq6:B, 6iq6:C, 6iq6:D, 6iq6:E, 1j0x:P, 1j0x:R, 6lgj:A, 6lgj:B, 6lgj:C, 6lgj:D, 6lgk:A, 6lgk:B, 6lgk:C, 6lgm:A, 6lgm:B, 6lgm:C, 6m61:Q, 6m61:P, 4o59:O, 4o59:P, 4o59:R, 4o59:Q, 4o63:P, 4o63:Q, 4o63:R, 8p5f:AAA, 8p5f:DDD, 8p5f:EEE, 8p5f:GGG, 5tso:P, 5tso:R, 5tso:S, 7u5m:A, 7u5m:B, 7u5m:C, 7u5m:D, 1u8f:P, 1u8f:Q, 1u8f:R, 4wnc:O, 4wnc:E, 4wnc:A, 4wnc:B, 4wnc:C, 4wnc:D, 4wni:O, 4wni:A, 4wni:B, 1znq:O, 1znq:P, 1znq:R, 1znq:Q
10 5x7g:A 700 108 0.2188 0.0400 0.2593 0.68 5x7h:A
11 5ou9:A 179 81 0.1641 0.1173 0.2593 0.86 5ou8:B, 5ou8:A, 5ou9:B
12 5g56:A 707 98 0.1875 0.0339 0.2449 1.4 5la0:A, 5la1:A, 5la2:A, 5la2:B, 2y8k:A
13 8xkf:C 377 54 0.1328 0.0451 0.3148 1.5 8xhu:A, 8xhu:B, 8xhu:C, 8xkf:A, 8xkf:B, 8xkf:D, 8xkf:F, 8xkf:E
14 6op5:A 383 36 0.1016 0.0339 0.3611 1.5 6op5:B
15 7ror:B 362 46 0.0938 0.0331 0.2609 2.0 7ror:A, 7ros:A, 7ros:B, 7rot:A, 7rot:B, 3vgj:A, 3vgj:B
16 2wjs:A 519 100 0.1719 0.0424 0.2200 2.6
17 2q2q:D 255 58 0.1562 0.0784 0.3448 3.1 2q2q:C, 2q2q:E, 2q2q:F, 2q2q:G, 2q2q:H, 2q2v:B, 2q2v:C, 2q2v:D
18 1x1t:A 236 38 0.0938 0.0508 0.3158 3.2 2ztu:A
19 1wmb:A 260 38 0.0938 0.0462 0.3158 3.5 1wmb:B, 2ztl:A, 2ztl:B, 2ztl:C, 2ztl:D, 2ztm:A, 2ztm:C, 2ztm:D, 2ztu:C, 2ztu:D, 2ztv:A, 2ztv:B, 2ztv:C, 2ztv:D
20 8c5w:A 634 32 0.1094 0.0221 0.4375 3.6 8c5o:A
21 2wz8:A 135 43 0.0938 0.0889 0.2791 3.7
22 1gmm:A 126 118 0.2031 0.2063 0.2203 4.6 1uxx:X
23 3sy9:B 372 14 0.0781 0.0269 0.7143 5.6 3sy9:A, 3sy9:C, 3sy9:D
24 3fks:P 235 55 0.1328 0.0723 0.3091 5.9 7md2:G, 7md3:G
25 2exx:A 305 43 0.1016 0.0426 0.3023 7.8 2exx:B, 2wm3:A, 2wmd:A
26 6rqf:I 215 30 0.1094 0.0651 0.4667 7.9 7qrm:I, 7qrm:A, 6rqf:A, 7zyv:I, 7zyv:A
27 4xqk:A 1517 106 0.2031 0.0171 0.2453 8.2 4xqk:B
28 2ber:A 601 39 0.1016 0.0216 0.3333 8.4 2bzd:A, 2bzd:B, 2bzd:C, 1eus:A, 1euu:A, 1w8n:A, 1w8o:A, 1wcq:A, 1wcq:B, 1wcq:C
29 8euh:A 418 35 0.0938 0.0287 0.3429 8.6 1cpt:A, 8euk:A, 8eul:A
30 6v4s:E 591 31 0.0781 0.0169 0.3226 8.8 6v4a:A, 6v4s:B, 6v4s:A, 6v4s:D, 6v4s:C
31 7yj6:A 390 36 0.0938 0.0308 0.3333 9.2 7yj5:A, 7yj6:B, 7yj7:A, 7yj8:A, 7yj9:A, 7yja:A, 7yja:B, 7yjb:A
32 1z1f:A 388 36 0.0938 0.0309 0.3333 9.6
33 7k44:A 356 43 0.1250 0.0449 0.3721 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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