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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK
KTDFEVFDALMVDSQKCSDVSELPYHQEPYVCKEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALS
IKDGVMVLSATHRYKKKYVTTLLYKP

The query sequence (length=186) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7myj:D 187 187 0.9785 0.9733 0.9733 2.09e-131 6b1u:B, 6b1u:D, 8bik:B, 8bik:E, 6c9f:B, 6c9g:B, 6c9j:B, 4cfe:B, 4cfe:D, 4cff:B, 4cff:D, 5ezv:B, 5ezv:D, 5iso:B, 5iso:D, 7myj:B, 4yef:A, 4yef:B, 4yef:C, 4yef:D, 4yef:E, 4yef:F, 4yef:G, 1z0m:A, 1z0m:B, 1z0m:C, 1z0n:A, 1z0n:B, 1z0n:C, 4zhx:B, 4zhx:D
2 6c9h:B 168 186 0.8763 0.9702 0.8763 1.71e-116 6e4t:B, 6e4u:B, 6e4w:B, 5kq5:B, 4qfr:B, 4qfs:B, 5t5t:B, 5ufu:B
3 6b2e:B 193 187 0.7849 0.7565 0.7807 6.57e-104 4cfh:B, 4rer:B, 4yee:A, 4yee:G, 4yee:B, 4yee:C, 4yee:D, 4yee:N, 4yee:E, 4yee:F, 4yee:H, 4yee:I, 4yee:J, 4yee:K, 4yee:L, 4yee:M, 4yee:O, 4yee:P, 4yee:Q, 4yee:R
4 2qrd:D 92 57 0.1613 0.3261 0.5263 1.51e-14 2qr1:B, 2qr1:D, 2qrc:B, 2qrc:D, 2qrd:B
5 4pyh:A 293 110 0.1935 0.1229 0.3273 1.17e-07
6 3c28:A 299 99 0.1505 0.0936 0.2828 0.005
7 8dl1:A 713 51 0.0914 0.0238 0.3333 0.49 8dge:A, 8dge:B, 8dge:C, 8dge:D, 8dl1:B, 8dl1:C, 8dl1:D, 8dl2:A, 8dl2:B, 8dl2:C, 8dl2:D
8 1nzb:A 332 26 0.0484 0.0271 0.3462 4.2 3c28:B, 3c29:A, 3c29:B, 3c29:G, 3c29:H, 1crx:B, 1crx:A, 2crx:B, 2crx:A, 3crx:B, 3crx:A, 4crx:A, 4crx:B, 5crx:A, 5crx:B, 1drg:A, 1f44:A, 2hof:A, 2hof:B, 2hoi:A, 2hoi:B, 2hoi:G, 2hoi:H, 1kbu:B, 1kbu:A, 1ma7:A, 1ma7:B, 3mgv:B, 3mgv:A, 3mgv:D, 3mgv:C, 1nzb:B, 1nzb:E, 1nzb:F, 1ouq:B, 1ouq:A, 1ouq:F, 1ouq:E, 1pvp:B, 1pvp:A, 1pvq:B, 1pvq:A, 1pvr:B, 1pvr:A, 1q3u:A, 1q3u:B, 1q3u:E, 1q3u:F, 1q3v:B, 1q3v:A, 1q3v:F, 1q3v:E, 7rhx:A, 7rhx:B, 7rhx:G, 7rhx:H, 7rhy:A, 7rhz:A, 7rhz:B, 5u91:A, 5u91:B, 5u91:E, 5u91:F, 1xns:A, 1xns:B, 1xo0:B, 1xo0:A
9 1p9b:A 424 40 0.0591 0.0259 0.2750 5.3
10 5kdi:A 211 49 0.0860 0.0758 0.3265 7.2 5kdi:B
11 2cdq:A 470 15 0.0538 0.0213 0.6667 8.9 2cdq:B
12 7esn:A 435 31 0.0645 0.0276 0.3871 9.6 7esk:A, 7esm:A, 8i4d:A, 7yqs:A
13 5kqi:A 714 48 0.0806 0.0210 0.3125 9.8 6b9b:A, 6b9b:B, 6caw:A, 6caw:B, 6cc6:A, 6cc6:B, 6cdq:A, 6cdq:B, 6cek:A, 6cek:B, 6cfq:A, 6cfq:B, 5kq0:A, 5kq0:B, 5kq2:A, 5kq2:B, 5kq3:A, 5kq3:B, 5kq6:A, 5kq6:B, 5kqh:A, 5kqh:B, 5kqi:B, 5kqk:A, 5kqk:B, 5kqn:A, 5kqn:B, 5kqq:A, 5kqq:B, 5ksf:A, 5ksf:B, 5ksg:A, 5ksg:B, 5ksk:A, 5ksk:B, 5ksn:A, 5ksn:B, 5kt8:A, 5kt8:B, 5kt9:A, 5kt9:B, 5l02:A, 5l02:B, 5l05:A, 5l05:B, 6mpy:A, 6mpy:B, 6mq0:A, 6mq0:B, 6mq1:A, 6mq1:B, 5sw4:A, 5sw4:B, 5sw5:A, 5sw5:B, 5sw6:A, 5sw6:B, 5sx0:A, 5sx0:B, 5sx1:A, 5sx1:B, 5sx2:A, 5sx2:B, 5sx3:A, 5sx3:B, 5sx6:A, 5sx6:B, 5sx7:A, 5sx7:B, 5sxq:A, 5sxq:B, 5sxr:A, 5sxr:B, 5sxs:A, 5sxs:B, 5sxt:A, 5sxt:B, 5sxw:A, 5sxw:B, 5sxx:A, 5sxx:B, 5syh:A, 5syh:B, 5syi:A, 5syi:B, 5syj:A, 5syj:B, 5syk:A, 5syk:B, 5syl:A, 5syl:B, 5syu:A, 5syu:B, 5syv:A, 5syv:B, 5syw:A, 5syw:B, 5syx:A, 5syx:B, 5syy:A, 5syy:B, 5txq:A, 5txq:B, 5v4o:A, 5v4o:B, 5v53:A, 5v53:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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