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BioLiP
>protein
ARKWFYKDPQGEIQGPFTTQEMAEWFQAGYFSMSLLVKRGCDEGFQPLGEVIKMWGRVPFAPG

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ruq:A 63 63 1.0000 1.0000 1.0000 1.16e-42 7ruq:C
2 7rup:A 63 62 0.8095 0.8095 0.8226 1.13e-36
3 3fma:C 86 59 0.3810 0.2791 0.4068 2.30e-10 3fma:A, 3fma:B, 3fma:D, 3fma:E
4 1l2z:A 62 30 0.1587 0.1613 0.3333 0.18
5 6tbu:A 842 27 0.1905 0.0143 0.4444 2.8
6 7wr7:B 235 23 0.1746 0.0468 0.4783 4.2 6zov:A, 6zov:B, 6zov:C, 6zov:D
7 1jft:A 340 33 0.1746 0.0324 0.3333 6.3 1bdh:A, 1bdi:A, 1jfs:A, 1jh9:A, 1pnr:A, 2pua:A, 2pub:A, 2puc:A, 2pud:A, 2pue:A, 2puf:A, 2pug:A, 1qp0:A, 1qp4:A, 1qp7:A, 1qpz:A, 1qqa:A, 1qqb:A, 1vpw:A, 1wet:A, 1zay:A
8 7kpj:E 218 20 0.1429 0.0413 0.4500 7.7 7kpj:F
9 8x7u:D 654 33 0.1587 0.0153 0.3030 9.4 8x7u:E, 8x7u:C, 8x7u:B, 8x7u:F, 8x7u:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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