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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ARITTPIARGLLRVGLTPDVVTILGTTASVAGALTLFPMGKLFAGACVVWFFVLFDMLDGAMARERGGGTRFGAVLDATC
DRISDGAVFCGLLWWIAFHMRDRPLVIATLICLVTSQVISYIKARAEASGLRGDGGFIERPERLIIVLTGAGVSDFPFVP
WPPALSVGMWLLAVASVITCVQRLHTVWTSPGAIDRMAI

The query sequence (length=199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6h5a:B 209 197 0.9899 0.9426 1.0000 2.64e-139 6h59:A, 6h59:B, 6h5a:A
2 6wm5:A 337 197 0.8543 0.5045 0.8629 1.24e-118 6wm5:C, 6wmv:A, 6wmv:C
3 5d92:D 342 187 0.4020 0.2339 0.4278 1.73e-34 5d91:A, 5d92:A, 5d92:B, 5d92:C
4 7pow:B 204 47 0.0905 0.0882 0.3830 0.002 7b1k:A, 7b1k:B, 7b1l:A, 7b1l:B, 7b1n:A, 7b1n:B, 7pow:A
5 4o6m:B 341 88 0.1307 0.0762 0.2955 0.003 4o6m:A, 4o6n:A, 4o6n:B, 4q7c:A, 4q7c:B
6 8gyw:B 380 79 0.0955 0.0500 0.2405 0.004 8gyw:A, 8gyx:B, 8gyx:A
7 7ouf:E 278 50 0.0804 0.0576 0.3200 0.16 7ouf:B, 7oug:E, 7oug:B, 7ouh:E, 7ouh:B, 7pel:B, 7pel:E
8 7rhq:A 974 109 0.1457 0.0298 0.2661 0.18 7rhr:A
9 8ero:A 364 79 0.1005 0.0549 0.2532 0.57 8ero:B, 8erp:B, 8erp:A
10 7ouf:A 258 46 0.0754 0.0581 0.3261 1.0 7ouf:D, 7oug:D, 7oug:A, 7ouh:D, 7ouh:A, 7pel:D, 7pel:A
11 6rmg:A 1026 88 0.1156 0.0224 0.2614 3.6 6dmb:A, 6dmy:A, 7k65:A, 6mg8:A, 6n7g:A, 6n7g:B, 6n7g:D, 6n7g:E, 6n7h:A, 6n7h:B, 6n7k:A, 6n7k:B, 6n7k:D, 6n7k:E, 6rtw:A, 6rvd:A, 6rvd:B, 7v6y:A, 7v6z:A
12 6voy:A 276 50 0.0603 0.0435 0.2400 7.1 6voy:C, 6voy:B, 6voy:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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