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BioLiP
>protein
AREVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILRDS

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1fvs:A 72 72 1.0000 1.0000 1.0000 6.82e-48 2ggp:B
2 1yjt:A 75 66 0.3056 0.2933 0.3333 1.84e-10 1yjv:A
3 3dxs:X 74 71 0.4167 0.4054 0.4225 1.57e-09
4 6ff2:A 67 62 0.3194 0.3433 0.3710 1.92e-09 6ff2:B
5 1oq6:A 76 64 0.3333 0.3158 0.3750 2.68e-09
6 1kvj:A 79 66 0.3333 0.3038 0.3636 7.32e-09 3cjk:B, 2k1r:A, 5t7l:B
7 1afj:A 72 66 0.3056 0.3056 0.3333 8.97e-09
8 6a71:B 71 66 0.2778 0.2817 0.3030 1.33e-08 6a72:A
9 1s6u:A 76 67 0.3333 0.3158 0.3582 1.95e-08
10 8ioy:A 816 60 0.2917 0.0257 0.3500 2.27e-07
11 4a48:B 69 69 0.2361 0.2464 0.2464 4.82e-07 4a48:A, 4a4j:A, 2xmw:A
12 1k0v:A 73 61 0.2778 0.2740 0.3279 1.09e-06 3i9z:A, 2qif:A, 2qif:B
13 7si6:A 873 66 0.3056 0.0252 0.3333 1.13e-06 7si3:A, 7si7:A
14 1kqk:A 80 62 0.2361 0.2125 0.2742 4.37e-06
15 1y3j:A 77 67 0.2639 0.2468 0.2836 5.27e-06
16 1mwz:A 73 64 0.2639 0.2603 0.2969 8.48e-05
17 1fd8:A 73 28 0.1944 0.1918 0.5000 0.37 3k7r:A, 3k7r:B, 3k7r:C, 3k7r:D, 3k7r:E, 3k7r:F, 3k7r:G, 3k7r:H, 3k7r:I, 3k7r:J, 3k7r:K, 3k7r:L, 5vde:B, 5vde:D, 5vdf:A, 5vdf:C, 5vdf:E, 5vdf:G, 5vdf:H
18 8q7i:A 257 14 0.1111 0.0311 0.5714 0.97 7o1f:A, 7o1f:B, 7o1f:D, 7o1f:F, 8p9o:A
19 8gj5:B 257 14 0.1111 0.0311 0.5714 1.1 8gj5:A, 8gj5:C, 8gjf:A, 8gjf:B, 8gjf:C
20 3or1:A 435 23 0.1389 0.0230 0.4348 3.7 3or1:D, 3or2:A, 3or2:D
21 7m5x:A 1000 27 0.1528 0.0110 0.4074 4.8 7fjp:B, 7fjq:A, 8ien:P, 7m5y:A
22 8ieo:P 1031 27 0.1528 0.0107 0.4074 4.8 8iem:P
23 7vpk:A 1055 27 0.1528 0.0104 0.4074 4.8 8iek:P, 8ies:P, 7m5v:A, 7n70:A, 7n72:A, 7n73:A, 7n74:A, 7n77:A, 7n78:A, 7vpi:A, 7vpj:A, 7vpl:A
24 6qh1:C 242 14 0.1111 0.0331 0.5714 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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