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BioLiP
>protein
ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLTQCTNCQTTTTTLWRRNASGDPVCNACGLYFKLHQVNRP
LTMRKDGIQTRNRKAS

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vd6:C 96 96 1.0000 1.0000 1.0000 1.40e-68 2l6y:A, 2l6z:A, 3vek:C, 3vek:F, 1y0j:A
2 4hca:A 99 97 0.8646 0.8384 0.8557 1.24e-58 4hc7:B
3 4hc7:A 108 106 0.8438 0.7500 0.7642 1.36e-55 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A
4 4hc7:A 108 54 0.2500 0.2222 0.4444 2.78e-10 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A
5 2gat:A 66 58 0.5000 0.7273 0.8276 1.50e-30 1gat:A, 1gau:A, 3gat:A
6 2m9w:A 63 61 0.4583 0.6984 0.7213 4.34e-27 8vg0:T, 8vg1:T
7 6zfv:A 63 43 0.4062 0.6190 0.9070 8.35e-25 1gnf:A
8 6zfv:A 63 40 0.2292 0.3492 0.5500 1.27e-10 1gnf:A
9 5o9b:A 68 58 0.4375 0.6176 0.7241 1.56e-24
10 5o9b:A 68 40 0.2396 0.3382 0.5750 2.06e-10
11 4gat:A 66 62 0.3646 0.5303 0.5645 5.01e-20 5gat:A, 6gat:A, 7gat:A, 2vus:I, 2vus:J, 2vus:K, 2vus:L, 2vus:M, 2vus:N, 2vus:O, 2vus:P, 2vut:I, 2vut:J, 2vut:K, 2vut:L, 2vut:M, 2vut:N, 2vut:O, 2vut:P, 2vuu:I, 2vuu:J, 2vuu:K, 2vuu:L, 2vuu:M, 2vuu:N, 2vuu:O, 2vuu:P
12 4gat:A 66 39 0.2292 0.3333 0.5641 3.82e-10 5gat:A, 6gat:A, 7gat:A, 2vus:I, 2vus:J, 2vus:K, 2vus:L, 2vus:M, 2vus:N, 2vus:O, 2vus:P, 2vut:I, 2vut:J, 2vut:K, 2vut:L, 2vut:M, 2vut:N, 2vut:O, 2vut:P, 2vuu:I, 2vuu:J, 2vuu:K, 2vuu:L, 2vuu:M, 2vuu:N, 2vuu:O, 2vuu:P
13 8j48:A 38 35 0.1771 0.4474 0.4857 4.73e-05 8j48:D
14 8j48:A 38 33 0.1875 0.4737 0.5455 1.17e-04 8j48:D
15 2kae:A 56 41 0.1667 0.2857 0.3902 2.73e-04
16 2kae:A 56 41 0.1771 0.3036 0.4146 2.85e-04
17 6fb3:A 1836 54 0.1979 0.0103 0.3519 0.046 6fb3:B, 6fb3:C, 6fb3:D, 6ska:A, 6ske:A, 6ske:C
18 6cnb:R 522 27 0.1250 0.0230 0.4444 0.75 8cen:O, 8ceo:O, 6cnc:R, 6cnd:R, 6cnf:R, 6eu0:Y, 6f40:U, 6f41:U, 6f42:U, 6f44:U, 8ffz:H, 5fmf:Q, 5fyw:O, 5fz5:O, 6gyk:O, 6gyl:O, 6gym:O, 7ml0:O, 7ml1:O, 7ml2:O, 7ml4:O, 1ngm:A, 1ngm:E, 1ngm:I, 1ngm:M, 1nh2:A, 7o4i:O, 7o4j:O, 7o72:O, 7o73:O, 7o75:O, 7oh9:K, 7oha:K, 7ohb:K, 5oqj:O, 5oqm:O, 7q5b:Y, 1rm1:A, 5sva:j, 4v1n:O, 4v1o:O, 1ytb:A, 1ytb:B, 1ytf:A, 7z7n:D, 7zb5:D, 7zb5:G, 7zs9:O, 7zsa:O, 7zsb:O
19 6eu0:Z 339 27 0.1250 0.0354 0.4444 1.2 6f40:V, 6f41:V, 6f42:V, 6f44:V, 7q5b:Z
20 7ml4:M 234 44 0.1458 0.0598 0.3182 1.4 5fyw:M, 5fz5:M
21 8v87:q 371 23 0.0833 0.0216 0.3478 1.5 6elz:q, 6em5:q, 7nac:q, 7ohr:q, 7r7a:q, 7r7c:q, 8v83:q, 8v84:q
22 8cen:M 310 36 0.1250 0.0387 0.3333 1.8 8ceo:M, 5fmf:P, 6gyk:M, 6gyl:M, 6gym:M, 7ml0:M, 7ml1:M, 7ml2:M, 7o4i:M, 7o4j:M, 7o72:M, 7o73:M, 7o75:M, 5oqj:M, 5oqm:M, 7zs9:M, 7zsa:M, 7zsb:M
23 2d74:B 137 26 0.1146 0.0803 0.4231 2.0 2dcu:B
24 7x0f:C 458 57 0.1875 0.0393 0.3158 2.9 7x0e:A, 7x0f:A, 7x0f:B, 7x0f:D, 7x17:A, 7x17:B, 7x17:C, 7x17:D
25 3k1f:M 185 35 0.1146 0.0595 0.3143 4.3
26 8h8j:C 283 53 0.1771 0.0601 0.3208 4.6
27 6kko:A 170 30 0.1146 0.0647 0.3667 6.0 6kko:B
28 4v1n:M 299 27 0.1042 0.0334 0.3704 6.2 4bbr:M, 4bbs:M, 4v1o:M
29 7bam:A 1904 53 0.1667 0.0084 0.3019 6.3 7bam:B, 7ban:A, 7ban:B, 7bao:A, 7plp:A, 7plp:B
30 8fkt:SY 378 23 0.0833 0.0212 0.3478 8.1 8fku:SY, 8fkv:SY, 8fkw:SY, 8fkx:SY, 8fky:SY
31 8azw:N 142 23 0.1042 0.0704 0.4348 8.3 8b2l:N3, 7qiw:r, 7qiz:r
32 4af1:A 410 27 0.1042 0.0244 0.3704 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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