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BioLiP
>protein
AQKLMRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQAKIKAAQY
QVN

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5u6l:A 83 83 1.0000 1.0000 1.0000 4.08e-60
2 2e5s:A 98 76 0.8193 0.6939 0.8947 1.86e-49 3d2q:A, 3d2q:B, 3d2q:C, 3d2q:D, 3d2s:A, 3d2s:B, 3d2s:C, 3d2s:D
3 5u6h:A 92 67 0.4217 0.3804 0.5224 1.43e-23 3d2n:A, 5u9b:A
4 2rpp:A 89 67 0.4096 0.3820 0.5075 3.45e-23
5 2rpp:A 89 37 0.1928 0.1798 0.4324 0.004
6 6dnh:C 117 63 0.2289 0.1624 0.3016 0.009 8e3i:C, 8e3q:C, 6fuw:C, 8r8r:C, 2rhk:D, 6urg:C, 6uro:C
7 2d9n:A 77 75 0.2651 0.2857 0.2933 0.014 2rhk:C
8 6dzi:v 116 80 0.3012 0.2155 0.3125 0.063 6dzk:M, 8fr8:j, 5o5j:M, 5o61:BM, 8v9j:m, 8v9k:m, 8v9l:m, 8whx:n, 8wi7:n, 8wi9:n, 8wib:n, 8wid:n, 8wif:n, 5xyu:M, 5zeb:m, 5zep:m, 5zeu:m
9 8dd5:A 272 26 0.1325 0.0404 0.4231 1.2 1m36:A, 2ozu:A, 2rc4:A
10 1yuh:H 218 17 0.1084 0.0413 0.5294 9.4 1yuh:B
11 4cs7:C 172 20 0.1205 0.0581 0.5000 9.7 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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