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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
APDAKKVAIYGKGGIGKSTTTQNTAAALAYFFDKKVMIHGCDPKADSTRMILHGKPQDTVMDVLREEGEEAVTLEKVRKI
GFKDILCVESGGPEPGVGCAGRGVITAVDMMRELEGYPDDLDNLFFDVLGDVVCGGFAMPLRDGLAQEIYIVTSGEMMAL
YAANNIAKGILKYAEQSGVRLGGIICNARNVDGEKELMDEFCDKLGTKLIHYVPRDNIVQKAEFNKMTVIEFDPECNQAK
EYRTLAKNIDENDELVKPTPMTMDELEELVVKYGL

The query sequence (length=275) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8q5t:A 280 275 1.0000 0.9821 1.0000 0.0 8q50:A, 8q5t:B, 8q5t:C, 8q5t:D, 8q5v:A, 8q5v:B, 8q5v:C, 8q5v:D, 8q5v:E, 8q5v:F, 8q5v:G, 8q5v:H, 8q5v:J, 8q5v:K, 8q5v:L, 8q5v:M
2 8q5w:G 281 275 0.8509 0.8327 0.8509 1.67e-174 8q5w:A, 8q5w:B, 8q5w:C, 8q5w:D, 8q5w:E, 8q5w:F, 8q5w:H, 8q5w:I, 8q5w:J, 8q5w:K, 8q5w:L
3 8oie:D 272 271 0.7418 0.7500 0.7528 1.58e-153 8oie:E, 8oie:I, 8oie:J
4 7qqa:A 273 271 0.7418 0.7473 0.7528 8.16e-152 7qqa:B, 7qqa:C, 7qqa:D
5 8q5x:A 280 271 0.7236 0.7107 0.7343 9.76e-149 8q5x:C, 8q5x:B, 8q5x:D
6 1cp2:A 269 270 0.6255 0.6394 0.6370 2.76e-126 1cp2:B
7 2afh:E 289 272 0.6364 0.6055 0.6434 1.10e-125 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
8 6nzj:A 273 271 0.6182 0.6227 0.6273 2.68e-125 6nzj:B
9 2ynm:B 268 270 0.3745 0.3843 0.3815 3.08e-47 2ynm:A
10 3fwy:A 268 272 0.3491 0.3582 0.3529 1.77e-43 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
11 1g3q:A 237 254 0.2073 0.2405 0.2244 0.001 1g3r:A
12 6iub:A 264 37 0.0655 0.0682 0.4865 0.005 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
13 1ion:A 243 254 0.2000 0.2263 0.2165 0.008
14 2bej:A 245 37 0.0618 0.0694 0.4595 0.055 2bek:A, 2bek:B, 2bek:C, 2bek:D
15 7n59:A 590 66 0.0982 0.0458 0.4091 0.12 7n59:B, 7n5a:A, 7n5a:B, 7n5b:A, 7n5b:B
16 8umc:A 322 62 0.0691 0.0590 0.3065 0.18 8umc:C
17 5jh2:A 257 164 0.1345 0.1440 0.2256 0.24
18 4rz3:A 244 254 0.2109 0.2377 0.2283 0.43 4rz3:B
19 5aup:I 241 199 0.1709 0.1950 0.2362 0.50 5aun:B, 5auo:B, 5aup:B, 3vx3:A, 3vx3:B
20 4v02:A 244 35 0.0545 0.0615 0.4286 0.56 4v02:B, 4v03:A, 4v03:B
21 7ejw:A 274 249 0.1891 0.1898 0.2088 0.84 7ejw:B, 5j1j:A, 5j1j:B, 8p53:A, 8p53:B, 8pb9:A, 8pb9:B
22 1dcq:A 276 60 0.0582 0.0580 0.2667 1.7
23 6kik:A 275 109 0.1018 0.1018 0.2569 1.9 5dan:A, 6kiy:A, 6ky6:A, 6ky6:B
24 2atv:A 168 43 0.0618 0.1012 0.3953 2.3
25 3kjg:A 254 42 0.0582 0.0630 0.3810 2.4 3kjg:B, 3kjh:A, 3kji:A, 3kji:B
26 6kyk:C 169 69 0.0727 0.1183 0.2899 2.8 3brw:D, 1c1y:A, 7c7i:A, 7c7i:B, 7c7j:A, 7c7j:B, 4dxa:A, 1gua:A, 4hdo:B, 4hdq:B, 5kho:C, 5kho:D, 3kuc:A, 4kvg:A, 4kvg:C, 6kyk:D, 6kyk:E, 6kyk:F, 4m8n:E, 4m8n:F, 4m8n:G, 4m8n:H, 6oq3:B, 6oq4:B, 8su8:B, 8t09:B, 8t7v:B, 6uzk:B, 3x1w:A, 3x1x:A, 3x1y:A, 3x1z:A, 3x1z:B
27 2bov:A 173 68 0.0836 0.1329 0.3382 3.4 2a78:A, 2a9k:A, 8fjh:B, 8fji:B, 6p0i:B, 6p0j:B, 6p0k:B, 6p0l:B, 6p0m:B, 6p0n:B, 6p0o:B, 1u8y:A, 1u8y:B, 1u8z:A, 1u8z:B, 1u90:A, 1u90:B, 1uad:A, 1uad:B, 1zc3:A, 1zc3:C, 1zc4:A, 1zc4:C
28 3iev:A 302 48 0.0727 0.0662 0.4167 4.4 7c1o:A, 3r9w:A, 3r9x:A
29 3q9l:A 257 32 0.0509 0.0545 0.4375 7.6 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
30 4mrn:A 600 63 0.0836 0.0383 0.3651 7.6 4mrn:B, 4mrp:A, 4mrp:B, 4mrr:A, 4mrr:B, 4mrs:A, 4mrs:B, 4mrv:A, 4mrv:B, 6pam:A, 6pam:B, 6pam:C, 6pam:D, 6pam:E, 6pam:F, 6pam:G, 6pam:H, 6pan:A, 6pan:B, 6pao:A, 6pao:B, 6paq:A, 6paq:B, 6par:A, 6par:B, 6par:C, 6par:D, 6par:E, 6par:F, 6vqt:A, 6vqt:B
31 7npf:C 404 48 0.0727 0.0495 0.4167 8.2 7npe:A, 7npe:B, 7npe:C, 7npe:D, 7npf:B, 7npf:D, 7npf:F, 7npf:H, 7npf:E, 7npf:G, 7npf:A
32 4ie6:A 447 43 0.0473 0.0291 0.3023 8.8 6aej:A, 6ak4:A, 6akw:A, 7ckk:A, 4cxw:A, 4cxx:A, 4cxy:A, 5dab:A, 7e8z:A, 5f8p:A, 4ie0:A, 4ie4:A, 4ie5:A, 4ie7:A, 8it9:A, 3lfm:A, 4qho:A, 4qkn:A, 7wcv:A, 4zs2:A, 4zs3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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