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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ANFIAEFFGHRVYPEVVSTEAARNDQATGTCPFLTAAKLVETSCVKAETSRGVCVVNTAVDNERYDWLVCPNRALDPLFM
SAASRKLFGYGPTEPLQFIAAPTLADQAVRDGIREWLDRGVHVVAYFQEKLGGELSISKTDSSPEFSFDWTLAEVESIYP
VPKIKRYGVLEIQTMDFHGSYKHAVGAIDIALVEGIDWLPTPAGRAALSKKMEGPNLSNVFKRTFYQMAYKFALSGHQRC
AGTGFAIPQSVWKSWLRHLANPTLIDNGDGTFSLGDTRNDSENAWIFVFELDPDTDASPRPLAPHLEIRVNVDTLIDLAL
RESPRAALGPSGPVATFTDKVEARMLRFWPKT

The query sequence (length=352) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3c25:A 354 354 0.9972 0.9915 0.9915 0.0 3bvq:A, 3bvq:B, 3c25:B
2 6tdw:H 249 123 0.0852 0.1205 0.2439 0.019
3 5bxa:A 414 32 0.0426 0.0362 0.4688 0.52
4 5y28:A 268 51 0.0455 0.0597 0.3137 0.78 5y2d:A
5 2xyk:B 130 36 0.0398 0.1077 0.3889 3.5 2xyk:A
6 7dwx:A 605 52 0.0483 0.0281 0.3269 4.6 7dwx:C, 8i92:B, 8i92:D, 8i93:B, 8i93:D, 6m17:A, 6m17:C, 8wby:A, 8wby:D, 8wbz:A, 8wbz:D
7 5b1b:K 49 40 0.0426 0.3061 0.3750 6.1 5b1b:X, 5b3s:K, 5b3s:X, 7d5w:K, 6juw:K, 6juw:X, 6jy3:K, 6jy4:K, 7vuw:X, 7vvr:K, 7w3e:K, 7w3e:X, 7y44:K, 7ypy:K, 7ypy:X
8 7og0:B 498 55 0.0455 0.0321 0.2909 6.5 7ofw:A, 7ofz:A, 7og0:A
9 3a1n:A 315 39 0.0398 0.0444 0.3590 7.9 3a1n:B, 3a4v:A, 3a4v:B, 3a9w:A, 3a9w:B, 3ajr:A, 3ajr:B
10 4nh0:A 861 62 0.0483 0.0197 0.2742 7.9 4n1a:A, 4n1a:B, 4n1a:C, 4n1a:E, 4nh0:B
11 3fd5:B 355 44 0.0398 0.0394 0.3182 8.0 3fd5:A, 3fd6:A, 3fd6:B
12 5bwe:B 69 26 0.0312 0.1594 0.4231 9.0 5bwe:F, 4pkf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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