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BioLiP
>protein
AMRKDAKAPYVTVFDERDGCGGPTKAGGNSGDNKGLCVKVAMKKVAYGEGGVDRIGEMARDVFVNYDKQRGK

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ssf:A 72 72 1.0000 1.0000 1.0000 1.85e-47 7ssf:C, 7ssf:E, 7ssf:G
2 4lm6:A 62 65 0.3889 0.4516 0.4308 7.17e-12 4lm6:C
3 7s96:A 63 68 0.4444 0.5079 0.4706 4.71e-11 7s96:C, 7s97:C, 7t89:A, 7t89:C
4 4lmx:C 66 49 0.3750 0.4091 0.5510 3.77e-10 8el3:A, 8el3:J, 8el3:G, 8el3:K, 8el4:A, 8el4:F, 8el5:A, 8el5:J, 8el5:K, 8el5:G, 8el6:A, 8el6:F
5 4lmx:E 66 47 0.3750 0.4091 0.5745 6.30e-10 8el3:C, 8el3:I, 8el3:E, 8el3:L, 8el4:C, 8el4:E, 8el5:C, 8el5:I, 8el5:E, 8el5:L, 8el6:C, 8el6:E, 4lmx:A, 4lmx:G, 4lmx:I, 4lmx:K
6 7tja:I 75 49 0.2778 0.2667 0.4082 1.05e-04 7tja:A, 7tja:R, 7tja:E, 7tja:M, 7tlf:A, 7tlf:E, 7tlf:I, 7tlf:M
7 7t7u:C 70 56 0.3194 0.3286 0.4107 1.56e-04
8 1qgw:A 76 71 0.3333 0.3158 0.3380 1.59e-04 1xf6:A, 1xg0:A
9 7tja:G 67 58 0.3056 0.3284 0.3793 2.20e-04 7tja:Q, 7tja:C, 7tja:K, 7tja:O, 7tlf:C, 7tlf:G, 7tlf:K, 7tlf:O
10 7t8s:B 78 55 0.3194 0.2949 0.4182 4.04e-04 7t8s:F, 7t8s:J, 7t8s:N
11 7t7u:A 81 55 0.2917 0.2593 0.3818 0.001
12 7t8s:D 70 57 0.3194 0.3286 0.4035 0.001 7t8s:H, 7t8s:L, 7t8s:P
13 7sut:A 78 45 0.2778 0.2564 0.4444 0.004 7sut:E
14 4lms:A 80 47 0.2639 0.2375 0.4043 0.016
15 1qgw:B 67 21 0.1806 0.1940 0.6190 0.041 1xf6:B, 1xg0:B
16 5yge:A 169 44 0.1944 0.0828 0.3182 0.35 6add:A, 6add:B, 5yge:B, 5yo2:A, 5yo2:B
17 3qkt:A 339 43 0.1806 0.0383 0.3023 0.67 4ncj:C, 4ncj:D, 3qkt:C
18 1fsu:A 475 60 0.2917 0.0442 0.3500 4.7
19 5ixg:B 169 22 0.1667 0.0710 0.5455 5.8 5ixg:C, 5ixg:A, 5ixg:D
20 6nwz:A 665 43 0.1944 0.0211 0.3256 7.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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